Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03250 ATGCCGGCGTGGTGGAGTAGAAAGTCATCAAAGAACAAACAAGAGCGTGACGGTAACGATAATGATGAAGAAGACGAAGAAGAACAATCACGCGGCGGCGGCGGCGGCGGGTTTAATTTCATGAAATCGCCTATCAACGCGATTAGGAACGGTGATGCTAAGAAGAATAAGACCAAGAAACAGAAGCCGAAGAGTTTTGATGAGGTTTTCAATCGGAATTCGCCGAGGACTAGTAAGGAGTTTGATGGCGGCGCCGCCACTGAAAAGAAAGGACTTCCGTTGCCTCTTCCTGCTCACTGCGATCAGGCTTTGGGATCTCCTTCTGTTTCTGGCTCTAGTGTCAGTTCTTCTACCTCTTCTGATGATCATCCGATTTCTCCTCAGTTCGTTTCTAATAACAGAGGGCAAGATGAGGTGAAGTTCAATGTGAGGTCAAGAAGTCCAGGTCCCGCGTCAAGAGGACCTACTAGCCCTACATCACCTCTTCATCCGAGGTTGCAGGTTTTGAGTCTAGACTCATCTACTGGAAAGCAAGATGACGGAAGGAGTCAATGTCATCCGTTGCCTCTTCCACCAGGTTCTCCTACTAGTCCTTCTTCTGCTCTTTGCAACACACGGTCAGGTGGGTCAAGTGGATCGTTTGAAAACACTGCCCCTAACCTGTCCAAGTGGAAGAAAGGAAAGCTTCTAGGCCGGGGAACATTTGGGCATGTTTATATTGGATTCAATAGTGAAAATGGACAAATGTGTGCAATAAAGGAAGTCAGGGTTGGCTGTGATGATCAAAATTCAAAAGAGTGCCTCAAACAACTGAACCAGGAGATAAATTTGCTTAATCAGCTTTCACACCCAAACATTGTTCAATACCATGGGAGTGAACTGGCAGAGGAATCACTTTCAGTTTATTTAGAATATGTCTCGGGTGGTTCTATCCATAAATTACTTCAGGAATATGGACCGTTCAAGGAGCCTGTTATTCAAAATTATACCAGGCAGATTGTCTCTGGGCTTGCCTATCTACATGGAAGAAATACAGTACACAGGGATATCAAAGGGGCTAACATACTAGTTGATCCTAATGGTGAAATCAAACTAGCAGACTTCGGAATGGCTAAACATATAACGTCTGCTGCTTCAATGCTTTCATTCAAAGGTAGTCCGTACTGGATGGCACCTGAGGTTGTAATGAACACAAATGGCTATAGCCTTCCAGTTGATATATGGAGCTTGGGATGCACACTTATTGAAATGGCAGCGGCGAAGCCTCCGTGGAATCAGTATGAAGGGGTAGCTGCCATATTTAAAATTGGAAACAGCAAAGACATGCCTGAAATTCCCGAGCATCTGTCAAATGATGCGAAGAATTTCATTATGTTATGTTTACAGCGGGACCCGTTAGCTCGCCCAACAGCCCAAAAATTGCTAGAGCACTCCTTCATTAGAGATCAATCAGCAACAAGAGCTGCAACCAGAGATGTTTCCTCTTACATGTTTGATGGAAGCCGAACACCGCCTGTTTTAGAGCCTCATTCCAATCGAAGAAGTATAACATCACTTGATGGAGACTATGCAACGAAGTCAGCTATTGCAGCTCCACGTGCAACAAGGAGTCCAAGAGATCACACAAGAATGATCACATCTTTACCAGTATCTCCCTCTTCAAGTCCATTGCGACAGTATGGAGCAGATCATAGGAGCTGTTTCTATTCTCCTCCTCATCCATCTTACACAATGATGGGACAAAATAGTTACACTTTGAATGACACACCCTCTTATCCAGTGCGATCAAATGCAACATTTACTCTTGACCCTTGGCATGAAACATCTAGATACAAAGCCCATACACCACCTGGTGGATCTCCAAGAATGAGGTTCATTTGA 1881 0.446 MPAWWSRKSSKNKQERDGNDNDEEDEEEQSRGGGGGGFNFMKSPINAIRNGDAKKNKTKKQKPKSFDEVFNRNSPRTSKEFDGGAATEKKGLPLPLPAHCDQALGSPSVSGSSVSSSTSSDDHPISPQFVSNNRGQDEVKFNVRSRSPGPASRGPTSPTSPLHPRLQVLSLDSSTGKQDDGRSQCHPLPLPPGSPTSPSSALCNTRSGGSSGSFENTAPNLSKWKKGKLLGRGTFGHVYIGFNSENGQMCAIKEVRVGCDDQNSKECLKQLNQEINLLNQLSHPNIVQYHGSELAEESLSVYLEYVSGGSIHKLLQEYGPFKEPVIQNYTRQIVSGLAYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHITSAASMLSFKGSPYWMAPEVVMNTNGYSLPVDIWSLGCTLIEMAAAKPPWNQYEGVAAIFKIGNSKDMPEIPEHLSNDAKNFIMLCLQRDPLARPTAQKLLEHSFIRDQSATRAATRDVSSYMFDGSRTPPVLEPHSNRRSITSLDGDYATKSAIAAPRATRSPRDHTRMITSLPVSPSSSPLRQYGADHRSCFYSPPHPSYTMMGQNSYTLNDTPSYPVRSNATFTLDPWHETSRYKAHTPPGGSPRMRFI 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03250 626 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 6 492 - -
Vifa6g03250 626 MobiDBLite consensus disorder prediction 105 138 - -
Vifa6g03250 626 MobiDBLite consensus disorder prediction 197 218 - -
Vifa6g03250 626 ProSitePatterns Protein kinases ATP-binding region signature. 230 253 IPR017441 GO:0005524
Vifa6g03250 626 Gene3D Transferase(Phosphotransferase) domain 1 221 503 - -
Vifa6g03250 626 MobiDBLite consensus disorder prediction 149 181 - -
Vifa6g03250 626 FunFam Mitogen-activated protein kinase kinase kinase 222 501 - -
Vifa6g03250 626 Pfam Protein kinase domain 225 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03250 626 CDD STKc_MEKK1_plant 223 480 - -
Vifa6g03250 626 SMART serkin_6 224 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03250 626 SUPERFAMILY Protein kinase-like (PK-like) 222 559 IPR011009 -
Vifa6g03250 626 MobiDBLite consensus disorder prediction 61 75 - -
Vifa6g03250 626 MobiDBLite consensus disorder prediction 1 218 - -
Vifa6g03250 626 ProSiteProfiles Protein kinase domain profile. 224 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03250 Vifa-Chr6 1073107667 1073111748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03250 1 539 MAP Kinase Kinase Kinase AT1G53570 55.088 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vifa6g03250 Pkinase 1.6e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03250 K04421 - gmx:100787064 865.529