Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03238 ATGACTACAGGATCATCGGTCTACTCTACCTCAATTCACCATTTCGAACTTTATACAGAAGGTTTTTCCGTACCAGCTCCTTCTACCTATACCTCAGTTGAAGCACCTAAAGGAGAATTTGGTGTCTTTCTGGTCAGTAATGGAAGCAATCGTCCCTACCGTCGTAAAATAAGAGCACCTGGCTCTGCCCATTCACAAGGACTCGATTCTATGTCCAAACATCACATGCCAGCAGATGTGGTCACCATCATAGTGGATGAGATCGGTCGAGTGGTCTCAGTTGGAGATGGGATTGCACGTGTTTATGGATTGAACGAGATTCAAGCTGGGGAATTGGTTGAATTTGCCAGCGGTGTGAAAGGAATAGCGTTGAATCTTGAGAATGAGAATGTCGGAATTGTTGTCTTTGGTAGTGATACCTCTATCAAAGAAGGAGATCTTGTCAAACGTACTGGATCTATTGTGGATGTTCCTGCGGGAAAGGCTATGCTAGGGCGTGTGGTCGACGCGTTGGGAGTACCTATTGATGGAAGAGGGGCTCTAAGCGATCACGAGCGAAGACGTGTCGAAGTGAAAGCCCCTGGGATTATAGAACGTAAATCAGTGCACGAGCCTATGCAAACTGGGTTAAAAGCGGTAGATAGCCTGGTTCCTATAGGCCGTGGTCAACGAGAACTTATAATCGGGGACCGACAAACTGGAAAAACAGCTATAGCTATCGATACCATATTAAACCAAAAGCAAATGAACTCAAGGGCCACCTCTGAGAGTGAGACATTGTATTGTGTCTATGTAGCGATTGGACAGAAACGCTCAACTGTGGCACAATTAGTTCAAATTCTTTCAGAAGCGAATGCTTTAGAATATTCCATTCTTGTAGCAGCCACCGCTTCGGATCCAGCACCTCTGCAATTTCTGGCCCCATATTCTGGGTGTGCCATGGGGGAATATTTCCGCGATAATGGAATGCACGCATTAATAATCTATGATGATCTTAGTAAACAGGCCGTGGCATATCGACAAATGTCATTATTGTTACGCCGACCACCAGGCCGTGAGGCTTTCCCAGGCGATGTTTTCTATTTACATTCCCGTCTCTTAGAAAGAGCCGCAAAACGGTCGGACCAGACAGGCGCAGGTAGCTTGACCGCCTTACCCGTCATTGAAACACAAGCTGGAGACGTATCGGCCTATATTCCCACCAATGTTATCTCCATTACGGATGGACAAATCTGTTTGGAAACAGAGCTCTTTTATCGCGGAATTAGACCTACTATTAACGTCGGCTTATCTGTCAGTCGCGTCGGGTCTGCCGCTCAGTTGAAAGCTATGAAACAAGTCTGCGGTAGTTTAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAAAAAATCCCACTGATATTCCTCGGAGGACGAAGCTTCAGGTGGACTGACTTGTTTGGAAGCTTTTCAAGTTGTAATTCCGAAGCCAGTGTCAACCAACCGGCCCGGGACTATGCCAACCCTGGTGAACCCGACGCGCCTCTTTATCACCCGTTACAGGAGGACGGACAGAGGCGCCAAGAACTCTCTGATCGTCTTGGTATCAACAGTATAGGAAGTGATATGCCCGACGAAGTTCGGGAGTCAATTCTCAAAACTCACAATTCGATAGAACTGAAGATCGAGAAAGCCCTTCGTTCAGACAGGTTTTCCGAGGATTCCCTTATGGAGAAAAGGCATCAGATAAGGGGGGTCCTCTTTTACCCTAATGGGAAGGCTTTATCATTACGGACTTATAATCAACACCTCCATTACATGGAGAACTTTGGAACCCACCGTAGCGTCCCTTATAAGAGGGTTATAAAAGCTTTATATAATCAAGACCTGGAACTTGAAAAGATTTAA 1899 0.4618 MTTGSSVYSTSIHHFELYTEGFSVPAPSTYTSVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTIIVDEIGRVVSVGDGIARVYGLNEIQAGELVEFASGVKGIALNLENENVGIVVFGSDTSIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPTINVGLSVSRVGSAAQLKAMKQVCGSLKLELAQYREVAAFAQKIPLIFLGGRSFRWTDLFGSFSSCNSEASVNQPARDYANPGEPDAPLYHPLQEDGQRRQELSDRLGINSIGSDMPDEVRESILKTHNSIELKIEKALRSDRFSEDSLMEKRHQIRGVLFYPNGKALSLRTYNQHLHYMENFGTHRSVPYKRVIKALYNQDLELEKI 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03238 632 NCBIfam F0F1 ATP synthase subunit alpha 82 466 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifa6g03238 632 Hamap ATP synthase subunit alpha [atpA]. 61 571 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifa6g03238 632 Gene3D - 88 154 IPR023366 -
Vifa6g03238 632 CDD ATP-synt_F1_alpha_N 87 152 - -
Vifa6g03238 632 Pfam ATP synthase alpha/beta family, beta-barrel domain 84 152 IPR004100 GO:0046034|GO:1902600
Vifa6g03238 632 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 442 466 - -
Vifa6g03238 632 CDD F1-ATPase_alpha_CD 154 436 IPR033732 GO:0032559
Vifa6g03238 632 FunFam ATP synthase subunit alpha 65 153 - -
Vifa6g03238 632 SUPERFAMILY HydB/Nqo4-like 10 84 IPR029014 -
Vifa6g03238 632 Gene3D - 2 87 IPR029014 -
Vifa6g03238 632 Gene3D - 441 467 IPR038376 -
Vifa6g03238 632 FunFam ATP synthase subunit alpha, mitochondrial 154 440 - -
Vifa6g03238 632 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 79 466 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifa6g03238 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 439 IPR027417 -
Vifa6g03238 632 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 209 433 IPR000194 GO:0005524
Vifa6g03238 632 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 83 154 IPR036121 GO:0046034|GO:1902600
Vifa6g03238 632 Pfam ATP synthase alpha/beta chain, C terminal domain 440 466 IPR000793 GO:0015986
Vifa6g03238 632 Gene3D - 155 440 IPR027417 -
Vifa6g03238 632 Pfam Respiratory-chain NADH dehydrogenase, 49 Kd subunit 8 84 IPR001135 GO:0016651|GO:0048038|GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03238 Vifa-Chr6 1072742584 1072744910 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03238 120 439 Primary Pumps ATPases(2) AT4G38510 26.444 1.20e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03238 K02132 - gmx:15308608 732.635