Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03229 ATGGCTATACCAAAATTGATTCCTGGGTTTCGATTCCATCCTACTGGAGTTGAATTGATTAAGTACTTTCTAAAAAGGAAAGTCATGGGGAAAAAGTTTCATGCTGATGTCATTGCTGAACTTGACATATACAAATATGCACCTTGGGATCTCCCAGATATGTCTTATCTGAAAAGTGGGGATTTGGAATGGTACTTCTTCTGTCCGATTGAGAAGAAGTATGGAAGTGGGGGGAGGTTGAATCGAGCTACTGAAATTGGGTTTTGGAAAGCTACAGGTAACGATAGAGCTGTTCAACATAATAATCATACTGTTGGGATGATAAAAACCTTGGTGTTTCATACTGGAAAAGCACCGCGTGGCGATCGAACGGATTGGGTTATGCATGAGTATAGGCTTGAAGATAAGGACCTGGCTGACAAAGGGATTGTTCAGGATTCATATGTGATCTGTAGGGTATTTCAAAAGGAAGGTCCTGGTCCCCAGAATGGTGCGCAATATGGGAAACCATTTATTGAAGATGACAGTGATGATGAAATGGGGATACCTTTTGTTGAATCGACTGCACATGTTCCCAGTTTGCCTGTGACACCTATTAGTTGTGTTATGAATGGCCAGCATCTTCAGCCTAGTAGATGTAGTGGTTTTATATCCATGCCATGTCAATCAGGATTGACGCCTTCTCCCACTCCTGTGAATTCATGTCAAACAGGATTAATTCCTTCTCCTGATCCTGCAAACTCATGTCAATCATGTCAATCAGGATTGACGCCTTCTCCCACTCCTGTGAATTCTTGTCAAACAGGATTAATTCCTTCTCCTGATCCGGCAAACTCATGTCAATCATGTCAATCAGGATTGACGCCTTCTCCCACTCCTGTGAATTCTTGTCAAACAGGATTGATGCCTTCTCCTGATCCTGCAAACTCATGTCAAACAGGATTGATTCCTTCTCCTGATCCTGCAAACTCATGTCAAACAGGATTGATTCCTTCTCCTGATCCTGCAAGTTCATGTCAAACTGGACTGATGCCTTCTCCCGATCCTGCGAGTTCATGTCAAATTGAATTGACGCCTTTTCCCGATCCTGCGAATTCATGTCAAACTGGATCGATGCCTTTTCCGGATCCTGTGAATTCATGTCAAACTGGATCGATGCCTTCTCCCGATCCCATGAGTTCATGTCAAACTGAATTGATGCCTTCTCCCTATCCTGCAAATCCATTTCAAACTGGATTGATGCTTTCTCCCTATCCTGTGAATTCATGTCAAACTGGACAGATGCCTTCTCCTGATCCCGTGAATTCGTGTCAAACTGGACCGATGCCTTCTCCAGAACCTGTGAACTGGTATCAAACCGGATCGATGCCTACTCCCGATCCTGTCATTTCGTGTCAAACTGGATCGATGCCTACTCCCGATCCTGTCATTTCGTGTCAAACTGAATTGATGCCTTCTCCTGACCCTGCAAGTATTTCATATCCAGACAATCAAGCTGCTAATAGTGATGATGATATTATATCAATGCTTGATATTTTCAAAGATGACAACACATTGCCTGAGGAAAATATTGCTGAAGGTGCACTTATGAGTGACTTTTTTGAGGGTTTGGGAGACCTGAATTTCTCGACCACATTTGGATCCTTTTACCAGAATGCTGACTTTAGCACAGACGGAATGGGCTTGATAGATCTAGACTCTGAGCTGTTCTGGTAG 1716 0.4324 MAIPKLIPGFRFHPTGVELIKYFLKRKVMGKKFHADVIAELDIYKYAPWDLPDMSYLKSGDLEWYFFCPIEKKYGSGGRLNRATEIGFWKATGNDRAVQHNNHTVGMIKTLVFHTGKAPRGDRTDWVMHEYRLEDKDLADKGIVQDSYVICRVFQKEGPGPQNGAQYGKPFIEDDSDDEMGIPFVESTAHVPSLPVTPISCVMNGQHLQPSRCSGFISMPCQSGLTPSPTPVNSCQTGLIPSPDPANSCQSCQSGLTPSPTPVNSCQTGLIPSPDPANSCQSCQSGLTPSPTPVNSCQTGLMPSPDPANSCQTGLIPSPDPANSCQTGLIPSPDPASSCQTGLMPSPDPASSCQIELTPFPDPANSCQTGSMPFPDPVNSCQTGSMPSPDPMSSCQTELMPSPYPANPFQTGLMLSPYPVNSCQTGQMPSPDPVNSCQTGPMPSPEPVNWYQTGSMPTPDPVISCQTGSMPTPDPVISCQTELMPSPDPASISYPDNQAANSDDDIISMLDIFKDDNTLPEENIAEGALMSDFFEGLGDLNFSTTFGSFYQNADFSTDGMGLIDLDSELFW 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03229 571 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Vifa6g03229 571 SUPERFAMILY NAC domain 3 156 IPR036093 GO:0003677|GO:0006355
Vifa6g03229 571 Gene3D NAC domain 15 158 IPR036093 GO:0003677|GO:0006355
Vifa6g03229 571 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 233 - -
Vifa6g03229 571 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Vifa6g03229 571 FunFam Nac domain-containing protein 86 15 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03229 Vifa-Chr6 1070284445 1070286929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03229 1 234 NAC Transcription Factor Family AT5G09330 54.430 2.83e-83 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa6g03229 NAM 7.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03229 - - psat:127100708 892.493