Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03215 ATGTTCATGGAAAATAACCAAAATAATTCTACTAGTGCATTCACAAGCACTTGGAATCTTGAGAAAATGGAAACAAATGAACAAAATCATATTATTCTCCAACAAGATGATCATCATCATCACCACCAAATTCCTATGAGTAATTCTTCTGGGATTTGGCCACCAAATAGCTACAACAACATGATGATGGCAGCAGCAGCAGCACCACCACCACCACCACCACCATCTTCATCAGGTTCACTCAGTGACATATTAGGGATCCACCAAATCGAAGAGGTTGAAGAACAAGAAGAAGAGTTAGGTGCTATGAAGGAAATGATGTACAAGATTGCAGCTATGCAACCGGTGGAAATCGATCCGGCGACAATTCGTAAACCTAAGCGGCGAAACGTTCGAATCAGCGACGATCCACAAAGTGTTGCAGCAAGACATAGAAGAGAAAGAATCAGTGAGAAGATTCGTATCCTTCAAAGACTTGTTCCTGGTGGAACTAAAATGGATACAGCTTCTATGCTTGATGAAGCCATTCGTTATGTTAAGTTCTTGAAGAAACAAATTAGGTTGCTTCAATCTACTCCTCAAAATCAACAATATCAATTACCACTTTCATCTCAATGCATCAATTCTACTCCTCCTAATGCTTTGTTGTTGTCTCCTTCCTGTGACATCGTCTGGCCTTTTGCACCAAATCTACTACTCACTTCCACGACGGCCGCCTCGATCGACTTGCCAGCCGGAGTTCAATTTAACGCCGGAGAACATTCACATCCACATCCACATCCACATCCACATCCACATTCACATTCACATGTCCATGCTTGTGATGGCTCATCAAGCTTTAACCCTCATCAGGTAATTAGTGAGTAA 867 0.4187 MFMENNQNNSTSAFTSTWNLEKMETNEQNHIILQQDDHHHHHQIPMSNSSGIWPPNSYNNMMMAAAAAPPPPPPPSSSGSLSDILGIHQIEEVEEQEEELGAMKEMMYKIAAMQPVEIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKKQIRLLQSTPQNQQYQLPLSSQCINSTPPNALLLSPSCDIVWPFAPNLLLTSTTAASIDLPAGVQFNAGEHSHPHPHPHPHPHSHSHVHACDGSSSFNPHQVISE 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03215 288 FunFam BHLH transcription factor 136 199 - -
Vifa6g03215 288 MobiDBLite consensus disorder prediction 272 288 - -
Vifa6g03215 288 CDD bHLH_AtIND_like 134 191 - -
Vifa6g03215 288 Gene3D - 136 205 IPR036638 GO:0046983
Vifa6g03215 288 SMART finulus 139 188 IPR011598 GO:0046983
Vifa6g03215 288 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 8 209 IPR045843 GO:0003700|GO:0006355
Vifa6g03215 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 199 IPR036638 GO:0046983
Vifa6g03215 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 182 IPR011598 GO:0046983
Vifa6g03215 288 MobiDBLite consensus disorder prediction 248 288 - -
Vifa6g03215 288 Pfam Helix-loop-helix DNA-binding domain 143 182 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03215 Vifa-Chr6 1065754500 1065755366 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03215 102 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 80.899 2.22e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa6g03215 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03215 - - psat:127102813 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03215 6 1065754500 1065755366 Vifa6g03215 6 1065754500 1065755366 ECH
Vifa6g03215 6 1065754500 1065755366 Vifa2g03618 2 1049494306 1049495124 PCT