Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03214 ATGAGCGGAAGTGGCAGAAAGCTATCTTCAAACAGGGTTTCAAGAGATGAACCTGAATTTTCATCCGAGAGTGCTACTAATAGCAATAGCTCAAGGTATTTGGAAAGAAATGATATGATAAATCCCAGAATGGGATTTTCATGCAAGGAACCTTTTTCTCGAGGCAGAGGTTCAAGTAAGGATGATGTTTGGAACCCAGACTACGAAGTTTTGGACGCAACAATCGCACAAGACACTGATGGAAGTTACAATATGAAAACCTCTCCAGGGTTTGAGGAATTGAAAAATAGGAAGCACAGTCAATCTGCAAAAAATGATTACAGCAGGAGAAGCAGGAGCCAAAGCCGGAGCCCCCCACATGGTTTTAGGTATTCAGCTGTTGATGACGAGAACAGAACGAGGGCTGGCGATGATGAGAACAGAACAAGGGTTGGCAGATTGATGCGACCTTGTAGAGATTTTGCTGTTGGGAACTGCAGAAGAGGCAGCCATTGCCATTTCCTTCACCATGATAAGCAAAGTTATGAGGATAGTAGGGAAAGTAGACACATGCAAGATGGACCCAGATATTGTAATCCCCGTGAGAGTGGGGATTATTCTCTCACAAGTCGAAGATCTAATGAAGCTTGTATTCATTTTGCAAAGGGAAGGTGTAGAGCGGGAGAATCATGCAAGTATGTGCATCATGGGAATTCTGATGAGTTTGATAAAGTTTCTGCAGATGAATCATATAGGGAAAGGGAAATTGATAGAAGACACATAGATAAATCATTCAAGCAGGGTGGCCCGTATTATCCAAACCACCGTGGTAATACTCCTTGCAAATTTTTTGCTTTTGGAAATTGTAGGAATGGTAAAGATTGTAGGTTTTCTCATGATAGACAAGCATTTACCAGCCCTATTAGAAGATTAAGGGATGATAGGTCAAGGAGTAATCAAGGTGAAGATCAGGTGTTGGATAGACAAATAGTGAGGAATTCAGTTACCCCTAATGAAAGGCGAAGAGATGATAGACGGGGTTCAGATGGCAGTATGGCTGATGTAGATAAAGTTTGGGATGGTCCAAAGCCGAATAATTTAGTTTCTGTCTGTGATACTGCAAACCTAGTTGAGAACAACAAAAAAGGTCTTTTAGGTGCCCCGGAACCTGGGTTCATGGCTTGGCCAATGAATAATGGATTGGACCATAGCTCAGACAGGAACATAATGCATAATGAATCACCATTTACAATTGATAAGCAGGAAGCCAACTGTTGGACGGCAGAAAATGCAGCTGACAACATTCTCATTTCTCAGTCAGTAGGTGGAGGCTTTTGGCCTGGAGATGAAAAAATGTCTCCTGATTGGAATTATGGTGCAAGATGTTCCAGCCATGTTAACGATGAGCATGGGCAGAATAAGCAACAAGGTGCTCCAGGTCAAGGACTAAATCAGAATGCTCAGAATGTAGCTGCTTTGCAAGTGGTTGGACAGAGTCAAGCAACAGTTTCCATTGTTCCTCCAAGATCCAGAATTATTGAAGGTTTACAGAACCAGGAGCTCTTCACTAAAGCAAACGACACTGTAGAACCAACTATCATGAATGCAAGCATATTGCAAATTGGTTCAGGAAATACTCCAATTCAGAACGTAGTCAGCAAAGAACAACTTAGCTGCCTCTCAGCCTCTCTTGCACATTTCCTCGGAACAGATCAGCAGTTCCCACAACTTCACTCTATTATAAATTCTTGTGATGCAAAGGACACTCTCTTCGCAAGCAAAATTGAAGGGCAATCATCGAAGCAATATGATCCAATGTGTGATAGTATGGAGCCCAAAAATATTAATGCAAATGGGGTCTCTCCAACCTTTTCTCCTAATACAAAGATTTCAAAAGATACAGCCAGAATTCCACCTCTGTTATCTAACCCAGGACACAATTTTGACCATTTTCGTAAAAAGGAGGCCAGCAACATGGACGCCGAAAAAAAGGAAATATCTCAATCTGAAAATAAAATTACAGAAGCGAATAGTCCTTTGGTAAACATGGGCCAAAATGATGGACCTGATGAGGCCAAGAAATTAAAGGACATAAAGGGGATTCGTGCATTTAAAACTTCATTGGTAGAACTCATTAAGGAGATCCTAAAACCAACATGGAAAGATGGTAAAGTCACCAAAGAAGATTATAAAGCAATTGTGAAGAAGGTTACTGATAAAGTAACTGGTACAGTAAATCAGGTTCATATACCTCAGACACAAGAGAAAATTGAACGCTATTTATCAGTTTCAAAACCAAAGCTTAACAAACTTGTACAGGCTTATGTGGAAAAGCTTCAGAAGGCCTAA 2328 0.4094 MSGSGRKLSSNRVSRDEPEFSSESATNSNSSRYLERNDMINPRMGFSCKEPFSRGRGSSKDDVWNPDYEVLDATIAQDTDGSYNMKTSPGFEELKNRKHSQSAKNDYSRRSRSQSRSPPHGFRYSAVDDENRTRAGDDENRTRVGRLMRPCRDFAVGNCRRGSHCHFLHHDKQSYEDSRESRHMQDGPRYCNPRESGDYSLTSRRSNEACIHFAKGRCRAGESCKYVHHGNSDEFDKVSADESYREREIDRRHIDKSFKQGGPYYPNHRGNTPCKFFAFGNCRNGKDCRFSHDRQAFTSPIRRLRDDRSRSNQGEDQVLDRQIVRNSVTPNERRRDDRRGSDGSMADVDKVWDGPKPNNLVSVCDTANLVENNKKGLLGAPEPGFMAWPMNNGLDHSSDRNIMHNESPFTIDKQEANCWTAENAADNILISQSVGGGFWPGDEKMSPDWNYGARCSSHVNDEHGQNKQQGAPGQGLNQNAQNVAALQVVGQSQATVSIVPPRSRIIEGLQNQELFTKANDTVEPTIMNASILQIGSGNTPIQNVVSKEQLSCLSASLAHFLGTDQQFPQLHSIINSCDAKDTLFASKIEGQSSKQYDPMCDSMEPKNINANGVSPTFSPNTKISKDTARIPPLLSNPGHNFDHFRKKEASNMDAEKKEISQSENKITEANSPLVNMGQNDGPDEAKKLKDIKGIRAFKTSLVELIKEILKPTWKDGKVTKEDYKAIVKKVTDKVTGTVNQVHIPQTQEKIERYLSVSKPKLNKLVQAYVEKLQKA 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03214 775 MobiDBLite consensus disorder prediction 455 476 - -
Vifa6g03214 775 SMART c3hfinal6 205 230 IPR000571 GO:0046872
Vifa6g03214 775 SMART c3hfinal6 145 171 IPR000571 GO:0046872
Vifa6g03214 775 SMART c3hfinal6 268 294 IPR000571 GO:0046872
Vifa6g03214 775 MobiDBLite consensus disorder prediction 1 64 - -
Vifa6g03214 775 Coils Coil 775 775 - -
Vifa6g03214 775 MobiDBLite consensus disorder prediction 176 195 - -
Vifa6g03214 775 MobiDBLite consensus disorder prediction 123 141 - -
Vifa6g03214 775 ProSiteProfiles Zinc finger C3H1-type profile. 204 232 IPR000571 GO:0046872
Vifa6g03214 775 MobiDBLite consensus disorder prediction 20 36 - -
Vifa6g03214 775 Gene3D - 251 306 - -
Vifa6g03214 775 ProSiteProfiles Zinc finger C3H1-type profile. 269 295 IPR000571 GO:0046872
Vifa6g03214 775 MobiDBLite consensus disorder prediction 649 663 - -
Vifa6g03214 775 MobiDBLite consensus disorder prediction 462 476 - -
Vifa6g03214 775 MobiDBLite consensus disorder prediction 327 346 - -
Vifa6g03214 775 MobiDBLite consensus disorder prediction 301 353 - -
Vifa6g03214 775 Coils Coil 645 665 - -
Vifa6g03214 775 SUPERFAMILY CCCH zinc finger 205 229 IPR036855 GO:0046872
Vifa6g03214 775 MobiDBLite consensus disorder prediction 91 113 - -
Vifa6g03214 775 MobiDBLite consensus disorder prediction 80 141 - -
Vifa6g03214 775 MobiDBLite consensus disorder prediction 301 315 - -
Vifa6g03214 775 Gene3D - 146 232 - -
Vifa6g03214 775 ProSiteProfiles Zinc finger C3H1-type profile. 145 172 IPR000571 GO:0046872
Vifa6g03214 775 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 774 - -
Vifa6g03214 775 MobiDBLite consensus disorder prediction 649 685 - -
Vifa6g03214 775 Pfam RNA-binding, Nab2-type zinc finger 273 292 - -
Vifa6g03214 775 Pfam RNA-binding, Nab2-type zinc finger 150 169 - -
Vifa6g03214 775 Pfam RNA-binding, Nab2-type zinc finger 209 228 - -
Vifa6g03214 775 SUPERFAMILY CCCH zinc finger 269 293 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03214 Vifa-Chr6 1061824524 1061829719 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa6g03214 zf-CCCH 0.00032 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03214 - K22909 gmx:100783856 762.296