Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03213 ATGCCTTCACTATTCCCTTTCTCTCTTTTCCTTTTCATCACATTCACCTCCGCCGCTCGCCACCATCATCACCCCTCACCCACTCCCAATACCTCCCCTTCTCTCTCTCCCTCCGCCGTACCAGACATCCAACAAGCCTGCAAAGCCACCCGCTTCCCTCAACAATGCCAATCCTCTCTCTCAAAACTCCCTCGAAACTCCACCACTCTCCAGCTCCTCCTATTCTCCATCGCACAATCCTCCGAAAATCTCGTAACCGCCAAATCAATGGTCAAATCCATTCTCGACTCTTCCAAAGACAGCCGCAACCGCACCGTCGCGGCTACCACCTGCCTCGAAACTCTAACCAACTCTCAACACCGCATTTCCCTCTCCAACGACGCGCTCCCACGCGGCAAAACCAAAGACGCAAGAGCATGGCTCAGCGCTGCCCTCGCCTATCAATACGACTGCGAGAACGGTCTCAAATACGCCAACGACACACGCGCCGTCGGTGAAGCCATGTCGTTTATCGAGTCTTTACAAATCCTCTCCAGTAACGCTCTTGCCATGGCGTTTTCCTACGACGTTTACGGAAACGACACTTCTTTCTGGAAGCCGCCGTCCACCGAGCGCGACGGTTTCTGGCAAGCGGGACAATCAGACGGAGGTTCCACCTCTAACATTGGAATTCCACCCGGATTGAAGCCGGATGTTACGGTGTGTAAGGGAGGGGAGAATGGATGCTACAAGACGGTGCAAGAAGCGGTTAACGCTGCGCCGAGTAACGGCGGTGACGGGAAGAGGTTTGTGATATTTATAAAAGAAGGGGTTTATGAAGAAACCGTTAGGGTTCCGTTAGAGAAGACGAATTTGGTATTCTTGGGCGACGGCATTGGGAAAACTGTCATCACAGGGTCTGCTAACGTTGGCCAGCCCGGAATGACGACTTACAATTCCGCTACAGTCGCGGTTCTTGGCGATGGATTCATGGCAAAGGATGTAACAATCCAAAACACAGCAGGTCCGGATGCACATCAAGCAGTGGCATTAAGATTAGACAGTGATCTTTCTGTAATTGAGAATTGCGAGTTAATAGGAAATCAAGATACTCTTTATGCTCATTCTTTGCGTCAATTCTACAAATCAAGCCGCATTATAGGAAACGTGGACTTCATCTTTGGAAATTCGGCTGCAATCTTCCAAGACTGTCAAATCCTGGTTCGTCCTAGACAAGTCAAGCCGGAGAAAGGCGAGAACAATGCAATCACAGCTCATGGTAGAACCGACCCTTCACAAACTACAGGGTTTGTTTTTCAGAACTGTTTGATTAATGGAACTGAGGATTACATGGCGTTGTATCATAGTAATCCTAAAGTGCATAAGAATTATTTGGGTAGGCCATGGAAGGAGTATTCTAGAACCGTTTATATCAACTCAGTTTTGGGAGAACTCGTTACACCAGGGGGTTGGATGCCATGGAATGGTGACTTTGCACTTAAGACACTTTATTATGGAGAATTTGAGAATAAAGGAGGTGGTTCTGATTTCTCTCAAAGGGTGTCTTGGAGTAGTAAAATCCCTGCTGAACATGTGTCAAGTTATTCGGTTGAGAATTTCATTCAAGGAAGTGAATGGATTCCATCGTTTCATTTTTCAAAACATCGTCCTAGTAGTCATCACATGACTAATAGGAAACATAAGTAA 1686 0.4751 MPSLFPFSLFLFITFTSAARHHHHPSPTPNTSPSLSPSAVPDIQQACKATRFPQQCQSSLSKLPRNSTTLQLLLFSIAQSSENLVTAKSMVKSILDSSKDSRNRTVAATTCLETLTNSQHRISLSNDALPRGKTKDARAWLSAALAYQYDCENGLKYANDTRAVGEAMSFIESLQILSSNALAMAFSYDVYGNDTSFWKPPSTERDGFWQAGQSDGGSTSNIGIPPGLKPDVTVCKGGENGCYKTVQEAVNAAPSNGGDGKRFVIFIKEGVYEETVRVPLEKTNLVFLGDGIGKTVITGSANVGQPGMTTYNSATVAVLGDGFMAKDVTIQNTAGPDAHQAVALRLDSDLSVIENCELIGNQDTLYAHSLRQFYKSSRIIGNVDFIFGNSAAIFQDCQILVRPRQVKPEKGENNAITAHGRTDPSQTTGFVFQNCLINGTEDYMALYHSNPKVHKNYLGRPWKEYSRTVYINSVLGELVTPGGWMPWNGDFALKTLYYGEFENKGGGSDFSQRVSWSSKIPAEHVSSYSVENFIQGSEWIPSFHFSKHRPSSHHMTNRKHK 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03213 561 SUPERFAMILY Pectin lyase-like 228 544 IPR011050 -
Vifa6g03213 561 PANTHER PECTINESTERASE 20 541 - -
Vifa6g03213 561 MobiDBLite consensus disorder prediction 21 40 - -
Vifa6g03213 561 NCBIfam pectinesterase inhibitor domain 9 183 IPR006501 GO:0004857
Vifa6g03213 561 Pfam Plant invertase/pectin methylesterase inhibitor 43 184 IPR006501 GO:0004857
Vifa6g03213 561 Pfam Pectinesterase 231 536 IPR000070 GO:0030599|GO:0042545
Vifa6g03213 561 CDD PMEI-like_3 46 184 - -
Vifa6g03213 561 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 187 IPR035513 -
Vifa6g03213 561 Gene3D - 227 548 IPR012334 -
Vifa6g03213 561 SMART PMEI_2 38 184 IPR006501 GO:0004857
Vifa6g03213 561 FunFam Probable pectinesterase/pectinesterase inhibitor 51 41 187 - -
Vifa6g03213 561 FunFam Pectinesterase 226 549 - -
Vifa6g03213 561 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 184 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03213 Vifa-Chr6 1061254897 1061256873 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03213 30 539 Carbohydrate Esterase AT5G09760 63.707 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03213 - - mtr:11442613 919.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03213 6 1061254897 1061256873 Vifa6g03213 6 1061254897 1061256873 ECH