Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03207 ATGCTGAGCTCTGATGATGATGATGGAGATATTGATGTATTCTATGACTCATTGGATAGTTTGTCAGGTCAAGAATCTGTTATAGCCGAAGACGAGTTTGGTTTCGAAAGGCGTTATGATGAAATTTGGGTGAATGAGCCTGTTAGTGTGAAAGAAAGAAGGGAACTTTTTCTGCAGGTGGAGCGGTCTCAAATGCAAGTCTTGTTGGAAGGACTTAAAGGGCGTCGCGAGGATGAAGTGGATGCAACTTCTACAGCTCCTGAGCACGGACAAAGAGAAGATGAAGCACAAGAAGAATTTCGGGATTTTGTAAAGAGTAAAACTAGTAGAAATAACTGGTGGAAGCGCATTGTAAATGTCGAAAAAGGCGACGAAGGAAAAGTTAGATCAAAATTTAGTACAGGGATGAATAAAGCAAGTAGAATAAAGGTAAGACGGAATAAAAAGAGGTGGCTTGAGTTCAGTGAGGTATACGTTGGTCAAGAGATTAAAGCTCACAAAGGATTGGTATGGAGTATGAAATTCAGTCCTAATGGTGAGTATTTAGCTAGTGGAGGTGAAGATGGTGTCGTGCGCATATGGCGCGTTATGTCACGTGACAAAAGCCGGCCCTTCATTTTCCTTCCAAATGATATTTTTCAAATTGAGGAATCACCACTGCACGAATTGTTTGGTCATTCCAGTGATATCTTGGATTTGGCTTGGTCTAATTCAGATATTCTTCTCTCGTCCTCTATGGATAAAACTGTCTGCGCATGGAAAATTGGCTGTGATCAATGTTTACGTGTTTTCCCTCACAAAGACTTTGTGACGTGCATTCAGTTCAACCCTGTTGATGAAAATTACTTCATCAGCGGATCAATAGATGGTAAAGTTCGAATATGGGGGATATGCGAAGAGCGAGTTATTGACTGGGCAGATATACGAGATGTCATAAGTGCTATAAGTTACCAACAAGATGGGAAAGGATTTGTAGTTGGTTCTGTTACAGGTACTTGCCGATTTTATGCTGCTTCAGGAAAATATTTCAAGCTTGAGGCTCAGGTAGATATCTGTGGAAAGAAGAAAGCATCAGGCAACAGGATTACAGGCATTCAGTTCTTCCAAAACAACTGTCAGAGAATTATGATCACGTCAGAGGATTCGAAAATTCGCATATTTGATAGAACTGAGATTGTTCAGAAATACAAAGGCCTTCCGTGGTCGGGAAGTCAGATGTCTGGTTCATTTACATCAAGTGGGAAACATATAATTTCGGTTGGAGAAGACTCGCGTGTTTATATTTGGAACTTCAATGACTTTGAAAGCGCTTCTTTGAAAAAAAAGAAATCCCAGCATTCTTGTGAATATTTTTCCTTCAAGGGTGTAACGGTTGCAATACCTTGGTGTGGCATGAAAGCAGAAGATAGAAATAACGTTTCGCGTTGTGTTTCAGAAACAAAAAGCAAGCTAGAGTTTGGTTCCGAGGTTAGAGATGCAGACCGTTTTTCTCTCGGTAACTGGTTCTTCATAGATGGTACATGCCGAGGTTCTATGACATGGCCTGAGGAGAAACTTCCAACATGGGACGAATATGATCATTGGAAGTTATATAAAAAAGATAGTAGCCATGGCAAGAATAAATCAGAAACATGGGGACTCACTATAGTGGCAGCTGGCAGTGATGGAACTATCAAGACATTCCACAACTTTAGTTTGCCTGTTAGGCTCTAG 1713 0.4069 MLSSDDDDGDIDVFYDSLDSLSGQESVIAEDEFGFERRYDEIWVNEPVSVKERRELFLQVERSQMQVLLEGLKGRREDEVDATSTAPEHGQREDEAQEEFRDFVKSKTSRNNWWKRIVNVEKGDEGKVRSKFSTGMNKASRIKVRRNKKRWLEFSEVYVGQEIKAHKGLVWSMKFSPNGEYLASGGEDGVVRIWRVMSRDKSRPFIFLPNDIFQIEESPLHELFGHSSDILDLAWSNSDILLSSSMDKTVCAWKIGCDQCLRVFPHKDFVTCIQFNPVDENYFISGSIDGKVRIWGICEERVIDWADIRDVISAISYQQDGKGFVVGSVTGTCRFYAASGKYFKLEAQVDICGKKKASGNRITGIQFFQNNCQRIMITSEDSKIRIFDRTEIVQKYKGLPWSGSQMSGSFTSSGKHIISVGEDSRVYIWNFNDFESASLKKKKSQHSCEYFSFKGVTVAIPWCGMKAEDRNNVSRCVSETKSKLEFGSEVRDADRFSLGNWFFIDGTCRGSMTWPEEKLPTWDEYDHWKLYKKDSSHGKNKSETWGLTIVAAGSDGTIKTFHNFSLPVRL 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03207 570 SMART WD40_4 348 388 IPR001680 GO:0005515
Vifa6g03207 570 SMART WD40_4 156 195 IPR001680 GO:0005515
Vifa6g03207 570 SMART WD40_4 389 430 IPR001680 GO:0005515
Vifa6g03207 570 SMART WD40_4 216 254 IPR001680 GO:0005515
Vifa6g03207 570 SMART WD40_4 298 337 IPR001680 GO:0005515
Vifa6g03207 570 SMART WD40_4 257 296 IPR001680 GO:0005515
Vifa6g03207 570 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 163 196 - -
Vifa6g03207 570 PANTHER WD REPEAT DOMAIN 44 88 201 IPR040324 -
Vifa6g03207 570 Pfam WD domain, G-beta repeat 218 253 IPR001680 GO:0005515
Vifa6g03207 570 Pfam WD domain, G-beta repeat 259 295 IPR001680 GO:0005515
Vifa6g03207 570 Pfam WD domain, G-beta repeat 162 194 IPR001680 GO:0005515
Vifa6g03207 570 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 295 IPR001680 GO:0005515
Vifa6g03207 570 Gene3D - 153 463 IPR015943 GO:0005515
Vifa6g03207 570 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 230 258 IPR000009 GO:0000159|GO:0019888
Vifa6g03207 570 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 365 393 IPR000009 GO:0000159|GO:0019888
Vifa6g03207 570 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 174 194 IPR000009 GO:0000159|GO:0019888
Vifa6g03207 570 ProSiteProfiles Trp-Asp (WD) repeats profile. 163 204 IPR001680 GO:0005515
Vifa6g03207 570 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 295 - -
Vifa6g03207 570 ProSiteProfiles Trp-Asp (WD) repeats profile. 223 263 IPR001680 GO:0005515
Vifa6g03207 570 SUPERFAMILY WD40 repeat-like 159 433 IPR036322 GO:0005515
Vifa6g03207 570 PRINTS G protein beta WD-40 repeat signature 241 255 IPR020472 -
Vifa6g03207 570 PRINTS G protein beta WD-40 repeat signature 182 196 IPR020472 -
Vifa6g03207 570 PRINTS G protein beta WD-40 repeat signature 283 297 IPR020472 -
Vifa6g03207 570 MobiDBLite consensus disorder prediction 78 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03207 Vifa-Chr6 1058452050 1058454719 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03207 157 327 Miscellaneous Gene Families AT5G08390 26.286 3.33e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03207 K20241 - gmx:100819135 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03207 6 1058452050 1058454719 Vifa6g03207 6 1058452050 1058454719 ECH
Vifa6g03207 6 1058452050 1058454719 Vifa2g02873 2 814491391 814494179 PCT