Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03202 ATGGTGAGAGACGATTTATACATCACGGTTCCGAGTTTATTCCGGTGTCCTATTTCGCTTGACGTGATGAAATCTCCGGTGAGTCTCTGCACCGGAGTTACCTACGACCGTTCCAGTATACAGCGTTGGCTGGATAACGGTAACAATACTTGTCCGGCGACTATGCAGATTCTTCAAACTAAGGATTTCATACCTAACCGTACCTTACATAGGCTCATCCAGATCTGGTCCGATTCAGTTCGCGACCGAGTAGACTCGCCCGATTCTCATCTATCCGGTGACTCGTGTGATAAACGTGATCAGTTACTCGTTGCTATGACCGATTTGGAGTCCGGTAGCGAGAACCGGTTCGAGTCGCTGGAGAAAATTGTACGGTTTGCGAAAGACTCGGAGGAGAATAGTGTTTTCCTGGCTAAAACGGAAGGTTTCGTGGCGTTGTTGGTAGGTTTTCTTGATAATGTTGATGGTGGAGTGGAACGGAGTGTGGAGTTGCTTGAACAGGTTGTTATTGCGTTGGATTTGGTTCTGAGTAAAATAGAGAATCGCGAGTTGATTCTGAAGAACCAGAAAGAGAGGGAAGGGGAGAGTTTAGATTCTTTGCTTCTTGTTTTGAAACAAGGAAGCTGTGAATCGAAGATTGCGTCAATTAGGGTTTTGAAATCGATAGCGGACGACACGGAATCGAAGCTTCTAATGGCGGAGAAAGAAGGTTTATTGTCTGAGTTGCTCAATCTAATCACGCCGGAGAAAGATGTAAACCTAATCGACAATTCACTCTCGTGTCTGGTGGCGATTTCAACGCCGAAGCGGAACAAAGCGAAATTGATTCACCTCGGAGCAGTGAAGGTTTTCACGAGCATTCTAACGTCGAATTTGAGCGTTTCGGTGACGGAGAACGTGTTGAAACTACTTGAAACGGTGTCGTCGACGAAGGAAGGGAGGTCGGAGATATGTGAAACACCGTCGTGTGTGGCGGCGATAGCAAACAAAGTGTTGAAAGTGTCCGCCGTGGCGACGGAGCACGCGGTGACGATACTATGGAGTGTTTGTTATTTGTTTCGTGATCAGAAAGCGCAAGAAGCAGTTACGAAAGCTAATGGATTGACGAAGATTCTACTTCTGATGCAGAGTAATTGCACGCCACATGTTCGTCAAATGTCTGTGGATTTGCTTAAGATATTTCGTGTTAATTCTAAGTCGTGTCTTTCTTCGTATGACACTAAAACGACTCATATTATGCCATTTTGA 1248 0.4559 MVRDDLYITVPSLFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQILQTKDFIPNRTLHRLIQIWSDSVRDRVDSPDSHLSGDSCDKRDQLLVAMTDLESGSENRFESLEKIVRFAKDSEENSVFLAKTEGFVALLVGFLDNVDGGVERSVELLEQVVIALDLVLSKIENRELILKNQKEREGESLDSLLLVLKQGSCESKIASIRVLKSIADDTESKLLMAEKEGLLSELLNLITPEKDVNLIDNSLSCLVAISTPKRNKAKLIHLGAVKVFTSILTSNLSVSVTENVLKLLETVSSTKEGRSEICETPSCVAAIANKVLKVSAVATEHAVTILWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCTPHVRQMSVDLLKIFRVNSKSCLSSYDTKTTHIMPF 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03202 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 86 IPR013083 -
Vifa6g03202 415 SUPERFAMILY ARM repeat 117 400 IPR016024 -
Vifa6g03202 415 Gene3D - 90 406 IPR011989 -
Vifa6g03202 415 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Vifa6g03202 415 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Vifa6g03202 415 CDD RING-Ubox_PUB 11 63 IPR045210 -
Vifa6g03202 415 PANTHER WDSAM1 PROTEIN 9 403 IPR045185 GO:0061630
Vifa6g03202 415 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Vifa6g03202 415 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Vifa6g03202 415 SUPERFAMILY RING/U-box 5 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03202 Vifa-Chr6 1056749505 1056750752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03202 1 415 U-box Gene Family AT5G64660 55.269 3.13e-146 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03202 - - cam:101496984 667.922