LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa6g03199	ATGAGTTTGGCGGGTACGGAGAGCTCGGAAGAGGGTGCAGTGCATCCAGAGCCACCTGATCCCGATGTTCTTGAGATTGATCCTACTTGTCGTTACATCAAGTATAAAGAAGTGATCGGCAAAGGCGCCTTCAAAACTGTTTACAGAGCATTTGATGAGGTCAATGGGATTGAAGTTGCATGGGGTCAGGTTCAGATTGACGAGGTGTTGCAGTCACCGGGTGATTTAGATAGGCTATACTCGGAAGTGCATTTATTGAAATCGTTACGGCACAGTAACATAGTAAGGTTCTACAATTCGTGGATTGATGATAAGCGCAAGACTGTTAATATGATTACTGAGCTGTTTACGTCGGGTAGCCTCAAACAGTATCGGAAAAAACACAAGAAGGTTGACTTGAAGGCTGTCAAAGGATGGGCTAGACAGATTCTGATGGGTTTAAACTACCTCCACAGTCACAATCCACCAATTATACACAGGGACTTGAAATGTGATAATATATTTATCAATGGTCACCAAGGAGAAGTTAAAATCGGTGATTTGGGGCTGGCGACTCTCTTGACTCGGGCTAATGCTAAGAGTGTTATAGGAACTCCAGAGTTTATGGCACCTGAAATGTATGATGAAAATTACAACGAATTAGCTGACATATACTCATTTGGCATGTGCATGCTTGAGTTGGTGACTTCTGAGTATCCTTACAGTGAATGCAGAAATTCAGCGCAGATATACAAGAAAGTTTCATCGGGTATAAAGCCTGTTGCTCTTTCAAGAGTGATAGATCCCGAGATAAAATCATTTATTGAAAAATGTCTTGTTCCAGCCACCCAAAGAATGTCAGCAAAGGAGCTTCTGATGGACCCCTTTGTTCAAGTGAATGGTTCGGCAAAGAACATTTCTTTTCCATTGCCTGATATTGTTCTTCCCAAACTGGGAGCCTCTGAAAACAGAGGTATGATTGTTGAGATAAGAAGGTTGAAGGGTGGTGATACCTTCTTTCTAAAAGGTGATCAAAATGATGAGAATTCTGTATCATTAGTTCTTCGAATAGCCGATCAGAAAGGACAAGCAAGAAATATCCATTTCATCTTCTACCTTGACAGTGATACTGCTGTCTCAGTTTCCAAGGAAATGGTTGAGCAACTTGAACTTGCTGATCAGAATGTAAAATTTATCGCCGAGTTAATCGATTTGTTATTGATGAAATTGATTCCTGAATGGAAACCTTGTGTAGCAATCGATCATTTAGCCTCCGTAACTGGTAAATGGACTAATGTTAGCCAACAGAGAGACTCAAAGTTGGCTAAAGACAAAGGAATCTCTAAACAATCCACTGAAGATGCAGGTCCCTCAACCTCATATGGAACAACAGCTGCAAAAGAGAACGTCGACAATATGGATATATGTTCTGAGATGTCGTATGCTTCTGCAACATCAGACATCAACGATAAGTTTTCAATGGTTTCATTCATGTCTGCTGAATCAGAGTTTGATGGAGAGAGTCAGACCTCATTTGCATCTGAAACCGGGACATCATCTGATTATAAGAGCAAGATTTTAGACATGGGAAGCAACAGTGTGATGAGCTGCTCAAGTTATCCCCTGAGTGTTTCTTCCTTGTCCGAACTCGATGATGAGTTGAGAGAAGAGTTAGAAATGATTGAACAGCAATACCAAGAGGCAATTAAAGATTTATCCAAAAGACGAAACACGGCCATCGAGGAAATTAAAAAGAGAATGGCAGAGAAGATGTTAGTATCATAG	1764	0.4087	MSLAGTESSEEGAVHPEPPDPDVLEIDPTCRYIKYKEVIGKGAFKTVYRAFDEVNGIEVAWGQVQIDEVLQSPGDLDRLYSEVHLLKSLRHSNIVRFYNSWIDDKRKTVNMITELFTSGSLKQYRKKHKKVDLKAVKGWARQILMGLNYLHSHNPPIIHRDLKCDNIFINGHQGEVKIGDLGLATLLTRANAKSVIGTPEFMAPEMYDENYNELADIYSFGMCMLELVTSEYPYSECRNSAQIYKKVSSGIKPVALSRVIDPEIKSFIEKCLVPATQRMSAKELLMDPFVQVNGSAKNISFPLPDIVLPKLGASENRGMIVEIRRLKGGDTFFLKGDQNDENSVSLVLRIADQKGQARNIHFIFYLDSDTAVSVSKEMVEQLELADQNVKFIAELIDLLLMKLIPEWKPCVAIDHLASVTGKWTNVSQQRDSKLAKDKGISKQSTEDAGPSTSYGTTAAKENVDNMDICSEMSYASATSDINDKFSMVSFMSAESEFDGESQTSFASETGTSSDYKSKILDMGSNSVMSCSSYPLSVSSLSELDDELREELEMIEQQYQEAIKDLSKRRNTAIEEIKKRMAEKMLVS	587

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa6g03199	587	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	20	579	-	-
	Vifa6g03199	587	FunFam	Serine/threonine-protein kinase WNK8	342	436	-	-
	Vifa6g03199	587	MobiDBLite	consensus disorder prediction	1	23	-	-
	Vifa6g03199	587	FunFam	Probable serine/threonine-protein kinase WNK1	18	114	-	-
	Vifa6g03199	587	Pfam	Oxidative-stress-responsive kinase 1 C-terminal domain	344	397	IPR024678	GO:0004674\|GO:0005524
	Vifa6g03199	587	SMART	serkin_6	33	290	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa6g03199	587	Gene3D	-	342	431	-	-
	Vifa6g03199	587	CDD	STKc_WNK	31	289	-	-
	Vifa6g03199	587	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	157	169	IPR008271	GO:0004672\|GO:0006468
	Vifa6g03199	587	Pfam	Protein kinase domain	35	290	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa6g03199	587	Gene3D	Phosphorylase Kinase; domain 1	19	114	-	-
	Vifa6g03199	587	Coils	Coil	537	575	-	-
	Vifa6g03199	587	MobiDBLite	consensus disorder prediction	434	457	-	-
	Vifa6g03199	587	ProSiteProfiles	Protein kinase domain profile.	33	290	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa6g03199	587	FunFam	probable serine/threonine-protein kinase WNK9	116	295	-	-
	Vifa6g03199	587	Gene3D	Transferase(Phosphotransferase) domain 1	116	297	-	-
	Vifa6g03199	587	SUPERFAMILY	Protein kinase-like (PK-like)	35	291	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa6g03199	Vifa-Chr6	1055477369	1055479974	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa6g03199	22	583	MAP Kinase Kinase Kinase	AT5G41990	46.575	2.29e-172	499

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WNK_NRBP	Vifa6g03199		Pkinase	6.8e-53	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa6g03199	K08867		-	gmx:121175054	766.533