Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03198 ATGGAATTTTTGGACGAAGACGCTAAACCGAAGTTCCTGTTTCAGTCCGGTGCACCCGCGCCCACTGTATCACAGCCTCACGAGAAACCAACGAAACCGTTCATCGCTGTAACCATCGCTCTCTCTTCAATCTTCTTCGCTCTCGCTATCTTCATCTTCCAATCAGAACCTTACAGATCGATTCTCTTCTGGTTCGCACTCTCACTTCTCCTCGGACCTTTCGCTCCTAGCTCCATCACCGGCGGAGATTTCCGCGTCGGCCGTGGTCACATCGTTAACTTCCCCGATCAGGAAGCTTCATCTGAGGATGATGACGTCAGAAAAAGATCTCAGCAGCGCCGATCTAAGCCGCGCAGATCGGAGGACGTTGCTGTTGCGTCCGTAGTTCTCCCGGCGCCGGTAGGTTCAAACGGAGGTGCTTTGAAGAATCGAAATGGAAACGGAAACGGAAACGGCGTTGCGTTGACAGCGGTTGTGGAGGAGGAGAAGGAATGGAACGATGAGGATATTGAGATTCTGAAGAAGCAGATTGTGAAACATCCGGTGGGGAAACCAGGACGATGGGAGGTGATAGCGGAGGCATTCGGAGGGCGGCACAAAGCAGAGAGCGTGGTGAAGAAGGTGAAGGAGTTAGGGGAGAAGAAGGTTGATGATTCGGATTCGTATGAGCAGTTTCTGAAAAAGAGAAAAGCGTTGGATAAGAGACTTGTTGAAGAAGGAGGTGAATTCGCCACGGTTGAGAAAGTTGAGAGTGTTTGGAGTTCGAATGAGGACATTGCGTTGTTGAATGCTCTGAAAGCTTTTCCGAAAGATGTTGCAATGAGATGGGAGAAAGTCGCTGCCGCTGTTCCTGGAAAATCCAAAGCAGCTTGTATGAAAAGAATGGCGGAATTGAAGAAAGGGTTTCGAACTGCAAAATCTGGATCCGAAGTTTAG 936 0.4968 MEFLDEDAKPKFLFQSGAPAPTVSQPHEKPTKPFIAVTIALSSIFFALAIFIFQSEPYRSILFWFALSLLLGPFAPSSITGGDFRVGRGHIVNFPDQEASSEDDDVRKRSQQRRSKPRRSEDVAVASVVLPAPVGSNGGALKNRNGNGNGNGVALTAVVEEEKEWNDEDIEILKKQIVKHPVGKPGRWEVIAEAFGGRHKAESVVKKVKELGEKKVDDSDSYEQFLKKRKALDKRLVEEGGEFATVEKVESVWSSNEDIALLNALKAFPKDVAMRWEKVAAAVPGKSKAACMKRMAELKKGFRTAKSGSEV 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03198 311 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 154 307 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Vifa6g03198 311 CDD SANT 253 299 IPR001005 -
Vifa6g03198 311 CDD SANT 164 211 IPR001005 -
Vifa6g03198 311 Gene3D - 245 310 - -
Vifa6g03198 311 SMART sant 161 214 IPR001005 -
Vifa6g03198 311 SMART sant 249 301 IPR001005 -
Vifa6g03198 311 FunFam Myb family transcription factor 247 307 - -
Vifa6g03198 311 SUPERFAMILY Homeodomain-like 249 296 IPR009057 -
Vifa6g03198 311 SUPERFAMILY Homeodomain-like 162 201 IPR009057 -
Vifa6g03198 311 Gene3D - 159 217 - -
Vifa6g03198 311 MobiDBLite consensus disorder prediction 100 121 - -
Vifa6g03198 311 MobiDBLite consensus disorder prediction 95 123 - -
Vifa6g03198 311 ProSiteProfiles Myb-like domain profile. 245 299 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03198 Vifa-Chr6 1055456821 1055457756 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa6g03198 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03198 - - gmx:100780658 349.747