Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03197 ATGAATGTGATGGAGTGTGATCAAATTGATTACTCATTCACCCCTCCATTTTTCCAAACAGAAGATATCTTATCTCCAAATACAATCCTAAATGAAATACTATTTGATCAAGAGGATCAATCACAATATCTCTTATCTCCAAATATCATCATAGATGAGATCTTTGATCAAGAAAAGTCCATTGAGGGATTGTTGCAGCAACATACGAACCACGACGAGACAATGCCTCTCGAGAATGAATTGTGTCAAGGAACTTCGGAAAAAGGCTGCGAAAACGTGCTTGGTTCAAGAGAGGAGGATTCTTTTTGGAAGGAAGTTCAAGATGAGTTAATGGAAGAGTCAAGTCTAGTTGATCTTTTGCTGATAGGAGCTGAAGCTGTTGAATCACGGAACATGACACTTGCTTCTGACATAATCAGAAAACTAAAGAATGCGGCGTTTTTAGAAAACGGCGATAGTTTATTGAACAGGTTGTGTCCTTTCTTTACACAAGGTTTGTTTTACAAAACTACAGATGCTCCTAAATTCGACTGTGAACATGTTTCTACACAGGCAAGCACATTCTGTGTGTTTCAGATACTTCAAGAGCTCTCTCCGTACGTAAAATTTGCTCATTTCACAGCAAACCAAGCAATTTTCGAAGCTACAGACGGTGTTCAACATGTTCATGTCATTGATTTCGATATCATGGAGGGAATCCAATGGCCATCATTGATGGTTGACTTTGCAATGAGAAAGAACACTACTTCCCTTAGAGTAACAGCAATCACAGTGGATCAGCAAAGTGCAGCCTCGGTTCAACAAACAGGAAGAAGGCTAAAAGAGTTCGCGGAATCGATCAATTTTTCATTCGTGTTCGATACGACGATGATGGCGAGCGAAGAAGATTTTCAAAGAATCGAACACTGTGACACGCTTATTGTCAACTGTATGATACATCAGTGGATGCCAAACAGAAGTTTCTCATTGGTCAAAACTTTTCTCGATGGCGCAAGAAAATTATCACCAAAGCTTGTTGTGTTAGTTGAAGAAGAACTGTTTAATTATTCCAGACTCAAATCCATGTCATTTGTGGAGTTTTTCTGTGAGGCTTTGCATCACTATATTGCAATTTGTGATTCACTAGTTACTACTTTGTGGGGTAGGCATAAGATGGAGTTAAGCATTATAGAGAAAGATGTGTTGGGAGTTAGAATCTTGGACAGTGTAAGACAGTTTCCTTGTGAAAGAGAAGAGAGAGTGTTGTGGGAAGAAAAGTTTTTTTATTCATTGAAAGGGTATAAAAGTGTTGGTATGAGTACATATAATATTTCACAGGCTAAGTTCTTGGTAAGCTTGTTTGGTAAAGGGTATTGGGTGCAATTTGAGAATTTTAAGTTGGCTTTGAGTTGGAAGTCAAGACCTTTGACTTCAGTTTCAATCTGGGTACCAATAGATTCCATGAGTCACAAGGTCAAATAG 1461 0.3847 MNVMECDQIDYSFTPPFFQTEDILSPNTILNEILFDQEDQSQYLLSPNIIIDEIFDQEKSIEGLLQQHTNHDETMPLENELCQGTSEKGCENVLGSREEDSFWKEVQDELMEESSLVDLLLIGAEAVESRNMTLASDIIRKLKNAAFLENGDSLLNRLCPFFTQGLFYKTTDAPKFDCEHVSTQASTFCVFQILQELSPYVKFAHFTANQAIFEATDGVQHVHVIDFDIMEGIQWPSLMVDFAMRKNTTSLRVTAITVDQQSAASVQQTGRRLKEFAESINFSFVFDTTMMASEEDFQRIEHCDTLIVNCMIHQWMPNRSFSLVKTFLDGARKLSPKLVVLVEEELFNYSRLKSMSFVEFFCEALHHYIAICDSLVTTLWGRHKMELSIIEKDVLGVRILDSVRQFPCEREERVLWEEKFFYSLKGYKSVGMSTYNISQAKFLVSLFGKGYWVQFENFKLALSWKSRPLTSVSIWVPIDSMSHKVK 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03197 486 Pfam GRAS domain family 116 475 IPR005202 -
Vifa6g03197 486 ProSiteProfiles GRAS family profile. 107 476 IPR005202 -
Vifa6g03197 486 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 103 471 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03197 Vifa-Chr6 1055454346 1055455806 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03197 116 475 GRAS Transcription Factor Family AT5G41920 31.250 1.14e-41 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa6g03197 GRAS 6.8e-74 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03197 - - gmx:100804613 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03197 6 1055454346 1055455806 Vifa6g03197 6 1055454346 1055455806 ECH