Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03191 ATGTATGCTTCTACTTCCTTTACTTCACAACTCATCCATGAGCTTTTTGTGGATTCTCACACAAGAAGGCTACTCTTCCAAAACCCTGCTGATCATCGATCACTAACCAACTCTCATGTTTTAACAAACAACCGCAATTCAACAGACTCATATTTTGGAATTCGTCAATTTGATTCAAATGTTGTAATGATACTTGCAGTCCTATTGTGTGCGCTTGTATGTTCACTTGCATTAAACTCCATCATAAGGTGTGCCTTAAGATTATCAAATGTAGCCATCAACAACAACCAAGCTTCACAACAATTGGCTAATAAAGGAATCAAGAAGAAAGCTCTCAAGACATTCCCCATAGTGAGCTATTCAACTGACTTGAAACTACCAGGTTCGGATATCGAGTGTGTGATATGCATCTCAGAATTCACAAAAGGTGAAAAAGTGCGCATATTACCTAAATGCAACCATGGTTTTCATGTTCGTTGCATTGATAAATGGCTAAAGGAACATTCATCATGTCCCAAGTGTAGACAGTGTCTTCTTGAAACATGTCGAAAGATTGTTGGATTAGAAGCAACACCTATATTGCCAGTGCCAGAAACTATTATAAGGATTCAACCACTAAACCATGAAGCTGTTGAACGTAACTATAGGGAAGAAAGCAGATAA 663 0.3801 MYASTSFTSQLIHELFVDSHTRRLLFQNPADHRSLTNSHVLTNNRNSTDSYFGIRQFDSNVVMILAVLLCALVCSLALNSIIRCALRLSNVAINNNQASQQLANKGIKKKALKTFPIVSYSTDLKLPGSDIECVICISEFTKGEKVRILPKCNHGFHVRCIDKWLKEHSSCPKCRQCLLETCRKIVGLEATPILPVPETIIRIQPLNHEAVERNYREESR 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03191 220 CDD RING-H2_EL5-like 132 175 - -
Vifa6g03191 220 PANTHER RING-H2 FINGER PROTEIN ATL78 17 210 IPR044602 GO:0016567|GO:0016740
Vifa6g03191 220 SMART ring_2 133 174 IPR001841 -
Vifa6g03191 220 FunFam RING-H2 finger protein ATL73 94 180 - -
Vifa6g03191 220 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Vifa6g03191 220 Pfam Ring finger domain 132 175 IPR001841 -
Vifa6g03191 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 179 IPR013083 -
Vifa6g03191 220 SUPERFAMILY RING/U-box 127 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03191 Vifa-Chr6 1053508276 1053508938 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03191 57 179 C3H Transcription Factor Family AT3G10910 51.128 6.47e-42 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03191 K19040 - gmx:100780127 294.278