Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03189 ATGTATGCTTCTACTTCCTTTACTTCACAGTATGAGGTTCTTGTGCAATCCCACACAAGAAGGTTACTCTTCCAAAGCCCAATTGATAATCAACCACTAAACAACCACAATTCAACAGATTCATATTTTGGAGTTCGTGAATTTGATTCTAATGTTGTGATGATACTTGCAGTGTTATTGTGTGCTCTTATTTGCTCACTTGCTTTAAACTCCATTATAAGGTGTGCTCTGAGGTTTTCTAATGTAGCCATCAACAACAACCAAGCTTCACAACAATTGGCTAATAAAGGAATCAAGAAGAAAGCTCTTAAAAAATTCCCCACATTAAACTATTCAACTGAGTTGAAACTACCTGGTTTGGACACAGAGTGTGTCATATGTCTCTCAGAGTTTGCCAAGGGAGAAAAGGTACGGATTTTGCCTAAATGCAACCATGGTTTTCATGTTCGTTGCATTGACAAATGGCTAAAGGAACATTCATCATGTCCCAAGTGCAGACAATGTCTTGTTGAAACATGTAGAAAGGTTGGTGAGTCGCAGGTGCAACCAATTGTGCTGCCTGTGCCGGAAATCACTATAAGGATTCAACCACTAGACCATGAAGCTGTTGAACGTAACTATAGGGAAGAAAGCAGATAA 639 0.3912 MYASTSFTSQYEVLVQSHTRRLLFQSPIDNQPLNNHNSTDSYFGVREFDSNVVMILAVLLCALICSLALNSIIRCALRFSNVAINNNQASQQLANKGIKKKALKKFPTLNYSTELKLPGLDTECVICLSEFAKGEKVRILPKCNHGFHVRCIDKWLKEHSSCPKCRQCLVETCRKVGESQVQPIVLPVPEITIRIQPLDHEAVERNYREESR 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03189 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 171 IPR013083 -
Vifa6g03189 212 Pfam Ring finger domain 123 166 IPR001841 -
Vifa6g03189 212 PANTHER RING-H2 FINGER PROTEIN ATL78 15 202 IPR044602 GO:0016567|GO:0016740
Vifa6g03189 212 SMART ring_2 124 165 IPR001841 -
Vifa6g03189 212 FunFam RING-H2 finger protein ATL73 85 171 - -
Vifa6g03189 212 CDD RING-H2_EL5-like 123 166 - -
Vifa6g03189 212 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Vifa6g03189 212 SUPERFAMILY RING/U-box 102 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03189 Vifa-Chr6 1053122332 1053122970 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03189 21 170 C3H Transcription Factor Family AT3G10910 48.125 8.33e-44 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03189 K19040 - gmx:100780127 292.352