Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03188 ATGTATGCTTCTACTTCCTTTACATCACAACATGTCCATGAGCTTCTTGTAGAAGCTGACTCAAGAAGGTTACTCTTCCAAAATCCAATTGATCATCAATCACTTAAAATGAATTCTCCTGTGTTTACAAACGTCCAAAATTCAACAGACTCATATTTTGGAGATAGTAAATTTGATTCAAACATTGTGATGATAATTGCATTCATATTATGTGTGTTTATTTTCTCACTTGTATTAAACTCTATCATAAGGTGTGCTTGTGCCTTAAAAGTTTCAAACGTAGCCATCGACAACATATCTTCTTCGAGTAGCAACGCTTTACCTAAATTGGCTACAAAAGGAATCAAGAAGAGAGCTCTTAAGAAATTCACAAAAGTGACTTATTCAACCGAGTTGAAACTACCAGGTTTGGATACCGAGTGTGTGATATGTCTCTCGGAGTTTACAAATGGTGAAAAGGTGCGCATTTTGCCTAAATGCAACCATGGTTTTCATGTCTGTTGCATTGACAAATGGCTAAAGGAACACTCATCATGTCCCAAATGTAGACAGTGCCTTCTTGAAACTTGTCGAAAGATAGGTGGGTCGCAGGTGCAACCAATTCTGTTGCCTGTGCCCGAAATTATTATTCAGATCCAAACACTAGAACCTGAAATTTTGGAGCGTAACTATAGAGAAATATAA 684 0.3699 MYASTSFTSQHVHELLVEADSRRLLFQNPIDHQSLKMNSPVFTNVQNSTDSYFGDSKFDSNIVMIIAFILCVFIFSLVLNSIIRCACALKVSNVAIDNISSSSSNALPKLATKGIKKRALKKFTKVTYSTELKLPGLDTECVICLSEFTNGEKVRILPKCNHGFHVCCIDKWLKEHSSCPKCRQCLLETCRKIGGSQVQPILLPVPEIIIQIQTLEPEILERNYREI 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03188 227 CDD RING-H2_EL5-like 140 183 - -
Vifa6g03188 227 PANTHER RING-H2 FINGER PROTEIN ATL78 17 218 IPR044602 GO:0016567|GO:0016740
Vifa6g03188 227 SUPERFAMILY RING/U-box 119 188 - -
Vifa6g03188 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 187 IPR013083 -
Vifa6g03188 227 SMART ring_2 141 182 IPR001841 -
Vifa6g03188 227 FunFam RING-H2 finger protein ATL73 100 188 - -
Vifa6g03188 227 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Vifa6g03188 227 Pfam Ring finger domain 140 183 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03188 Vifa-Chr6 1052229773 1052230456 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03188 36 187 C3H Transcription Factor Family AT3G10910 43.226 3.08e-37 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03188 K19040 - gmx:100780127 293.123