Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03186 ATGTATGCTTCTACTTCCTTTACTTCACCACTCCTCCATGAGCTTCTTGTGGAATCTCACACAAGAAGGTTACTCTTCCAAGGCCCAATTGATCATCAATCACTTAAAATCAAGTCTCCTTTCTTCATAAACAACCACAATTCTACAGACCCATCTTTCGGAGCTCGTGAATTTGATTCAAATGTAGTGATGATAATTGCAGTTCTATTATGTGTGTTTATTTGTTTACTTGCATTAAACTCCATCATAAGGTGTGTGTGTGCCTTAAGGATTTCAAACGTAGCCATCAACAACAACAACAACAACGACTCTACTTGGAGTTTGAGTAGCAATACTTCACCTAAATTGGCTCAAAAAGGAATCAAGAAGAAAGCTCTTAAGAAATTCCCAAAAGTGACATTTTCAAGTGAGTTGAAACTACTAGGTTTGGATACCGAGTGTGTGATATGTCTCTCAGAGTTTACAAATGGTGTAAAGGTGCGCGTTTTGCCTAAATGCAACCATGGATTTCATGTATGTTGTATTGACAAATGGCTAAAGGAACACTCATCATGTCCCAAGTGTAGACAATGCCTTCTTGAAACTTGTCCAAACATTGGTGGATCGCAGGTGCAACCAATTGTGTTGCCGGTGCCAGAAGCCATTATACAGATCCAACCACTAGAACCTGAAGCTTTGGAGTGTAACTATAGAGAAACATGA 702 0.3917 MYASTSFTSPLLHELLVESHTRRLLFQGPIDHQSLKIKSPFFINNHNSTDPSFGAREFDSNVVMIIAVLLCVFICLLALNSIIRCVCALRISNVAINNNNNNDSTWSLSSNTSPKLAQKGIKKKALKKFPKVTFSSELKLLGLDTECVICLSEFTNGVKVRVLPKCNHGFHVCCIDKWLKEHSSCPKCRQCLLETCPNIGGSQVQPIVLPVPEAIIQIQPLEPEALECNYRET 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03186 233 FunFam RING-H2 finger protein ATL73 108 194 - -
Vifa6g03186 233 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Vifa6g03186 233 Pfam Ring finger domain 146 189 IPR001841 -
Vifa6g03186 233 SUPERFAMILY RING/U-box 126 195 - -
Vifa6g03186 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 193 IPR013083 -
Vifa6g03186 233 PANTHER RING-H2 FINGER PROTEIN ATL78 17 225 IPR044602 GO:0016567|GO:0016740
Vifa6g03186 233 SMART ring_2 147 188 IPR001841 -
Vifa6g03186 233 CDD RING-H2_EL5-like 146 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03186 Vifa-Chr6 1051658191 1051658892 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03186 58 198 C3H Transcription Factor Family AT3G10910 48.227 1.18e-37 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03186 K19040 - gmx:100780127 286.96