Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03184 ATGTATGCTTCTACTTCCTTTACTTCACCATTCCTCCATGAGCTTCTTGTGGAATCTCACACAAGAAGGTTACTCTTCCAACACCCTGTTGATCATCAATCACTAACCAACTCCGATGTTTTAACAAACAACCATAATTCAACAGACTCACATTCTCTTGAATTTGATTCAAATGTTGTGATGATACTTGCAGTTCTATTGTGTGCGCTTATTATATGTTCACTTGTATTAAACTCCATCATAAGGTGTGCTTTTAGGTTTTCAAACGTAGCCATCAGCAATAACGGCTCTTCTTTGAGTTCGAGCAGCAACTCTTCACCTCAATTGGGCAACAAAGGAATCAAGAAGAAAGCTCTCAAGACATTTCCTATAGTGAGCTTCTCAGTTGAGGTGCAACTGCCAGGTTTGGATGCGGAGTGCATGATATGTCTCTCAGAGTTCGCAAAGGGTGAAAAGATACGCATATTGCCTAAATGCAACCATGGTTTTCATGTTGGTTGCATTGACAAATGGCTAAAGGAACATTCATCATGCCCCAAGTGCAGACAGTGCCTCCTTGAAACATGTAGAAAGATTGTTGGATCAGAAGCACCACCTATGTTGCCGGTGCCAGAAACTATTATTAGGATTCAACCACTAGACCATGAAGCCGTTGAACGTAGTTATAGGGAAGAAAGCAGATAA 684 0.4094 MYASTSFTSPFLHELLVESHTRRLLFQHPVDHQSLTNSDVLTNNHNSTDSHSLEFDSNVVMILAVLLCALIICSLVLNSIIRCAFRFSNVAISNNGSSLSSSSNSSPQLGNKGIKKKALKTFPIVSFSVEVQLPGLDAECMICLSEFAKGEKIRILPKCNHGFHVGCIDKWLKEHSSCPKCRQCLLETCRKIVGSEAPPMLPVPETIIRIQPLDHEAVERSYREESR 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03184 227 SMART ring_2 140 181 IPR001841 -
Vifa6g03184 227 FunFam RING-H2 finger protein ATL73 100 187 - -
Vifa6g03184 227 SUPERFAMILY RING/U-box 122 187 - -
Vifa6g03184 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 186 IPR013083 -
Vifa6g03184 227 PANTHER RING-H2 FINGER PROTEIN ATL78 17 217 IPR044602 GO:0016567|GO:0016740
Vifa6g03184 227 CDD RING-H2_EL5-like 139 182 - -
Vifa6g03184 227 Pfam Ring finger domain 139 182 IPR001841 -
Vifa6g03184 227 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03184 Vifa-Chr6 1051079758 1051080441 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03184 55 186 C3H Transcription Factor Family AT3G10910 50.000 4.49e-39 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03184 K19040 - gmx:100780127 279.256