Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03183 ATGTATGCTTCTACTTCTTTTACTTCACCACTCCTCCATGAGCTTCTTGTGGAATCTCACACAAGAAGGTTACTCTTCCAAAGCCCTTCTGATGATCAATCAGTAACCAACTCTCCTGTTCTCACACACAACAATTCAACCAATTTATTTTTTGGTCTTACTGAAACTGATGCAAATGTTGTGATGATACTTGGAGTTCTATTATGTGCTCTTATTTGCTCACTTGCATTAAACTCCATCATAAGATGTGCCTTAAGGCTTTCAAACCTAGCCATCAACAATAACGAAACTTCTTCAAGTTCAAGCAGCAACTCTTCACCTCAACTGGCCAACAAAGGAATCAAGAAGAAAGCACTCAAAACATTTCCAACAGTAAGTTATTCAACTGAGTTGAAATCACCATGTTTGGATACGGAGTGTGTGATATGTATCTCAGAATTTACAAAGGGTGAAAAGGTGCGCATATTGCCTAAATGCAACCACGGTTTTCATGTTGGTTGCATTGACAAATGGCTAAAGGCACACTCATCATGCCCCAAGTGCAGACAGTGCCTCCTTGAGACTTGTCGAAAGATTGTTGGATTGGAAGCTCCACCACCTATGTTGCCGGTGCAAGAAACTATTATAACCATCCAACCGCTAAACCGTGAAGCTGTTGAGCGTAGCTATAGAGAAGAAAGCAGATAA 687 0.4061 MYASTSFTSPLLHELLVESHTRRLLFQSPSDDQSVTNSPVLTHNNSTNLFFGLTETDANVVMILGVLLCALICSLALNSIIRCALRLSNLAINNNETSSSSSSNSSPQLANKGIKKKALKTFPTVSYSTELKSPCLDTECVICISEFTKGEKVRILPKCNHGFHVGCIDKWLKAHSSCPKCRQCLLETCRKIVGLEAPPPMLPVQETIITIQPLNREAVERSYREESR 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03183 228 Pfam Ring finger domain 139 182 IPR001841 -
Vifa6g03183 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 186 IPR013083 -
Vifa6g03183 228 PANTHER RING-H2 FINGER PROTEIN ATL78 17 218 IPR044602 GO:0016567|GO:0016740
Vifa6g03183 228 CDD RING-H2_EL5-like 139 182 - -
Vifa6g03183 228 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Vifa6g03183 228 FunFam RING-H2 finger protein ATL73 99 187 - -
Vifa6g03183 228 SMART ring_2 140 181 IPR001841 -
Vifa6g03183 228 SUPERFAMILY RING/U-box 122 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03183 Vifa-Chr6 1050867835 1050868521 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03183 52 201 C3H Transcription Factor Family AT3G10910 47.771 4.45e-43 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03183 K19040 - gmx:100780127 300.056