Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03182 ATGTATGCTTCTATTTCCTTTATTTCACAGCATGAGTTTCTTGTGGAATCCCACACAAGAAGGCTACTCTTCCAAGGCCCAATAGATCATCAATCGTTAAAAACCTCCCATGTTCTCACACACAACAATTCAACAAATTTATATTTTGGTCTTAGTGAAACTGATGCAAATGTTGTGATGATACTTGCAGTCCTATTGTGTGCTCTTATATGTTCACTTGTATTAAACTCCATCATAAGGTGTGCCTTGAGGTTTTCAAACCTAGCCATCAACAACGACTCTTCTTCAAGTTCGAGCAGCTACTCTTCACCTCATTTGGTGAACAAAGGAATCAAGAAGAAGGCTCTCAAAACATTTCCAACAGTAAGTTATTCAAGTGAGTTGAAGTTACCATGTTTGGATACGGAGTGTGTGATATGTATCTCAGAATTTACAAAGGGTGAAAAGGTGCGCATATTGCCTAAATGCAACCACGGTTTTCATGTTGGTTGCATTGACAAATGGCTAAAGGCACACACATCATGCCCCAAGTGCAGACAGTGCCTCCTTGAGACTTGTCGAAAGATTGTTCGATTGGAAGCTCCACCACCTATGTTGCCGGTGCAAGAAACTATTATACCCATCCAACCGCTAAACCGCGAAGCTGTTGAGAGTAGCTATAGGGAAGAAAGCAGATAA 678 0.4086 MYASISFISQHEFLVESHTRRLLFQGPIDHQSLKTSHVLTHNNSTNLYFGLSETDANVVMILAVLLCALICSLVLNSIIRCALRFSNLAINNDSSSSSSSYSSPHLVNKGIKKKALKTFPTVSYSSELKLPCLDTECVICISEFTKGEKVRILPKCNHGFHVGCIDKWLKAHTSCPKCRQCLLETCRKIVRLEAPPPMLPVQETIIPIQPLNREAVESSYREESR 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03182 225 CDD RING-H2_EL5-like 136 179 - -
Vifa6g03182 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 183 IPR013083 -
Vifa6g03182 225 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
Vifa6g03182 225 SUPERFAMILY RING/U-box 116 184 - -
Vifa6g03182 225 SMART ring_2 137 178 IPR001841 -
Vifa6g03182 225 FunFam RING-H2 finger protein ATL73 96 184 - -
Vifa6g03182 225 PANTHER RING-H2 FINGER PROTEIN ATL78 12 215 IPR044602 GO:0016567|GO:0016740
Vifa6g03182 225 Pfam Ring finger domain 136 179 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03182 Vifa-Chr6 1050790725 1050791402 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03182 50 198 C3H Transcription Factor Family AT3G10910 48.052 1.97e-41 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03182 K19040 - gmx:100780127 278.1