Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03181 ATGTATGCTTCTACTTCCTTTACTTCAACACTCCATCATGACCTTCTTGTGGATTCCCACACAAGAAGGTTACTCCTCCAACTCCCAATTGATTCAAATGTAGGCATGATACTTACAGTCCTATTATGTACTTTTATTTGCTCACTTGCATTAATCTCCATCGTAAGGTGTGCTTTGAGGTTTTCAAACGCAGCCATCAACAACGGCTATGCTTCGAGTTCGAGCAGCAACTCTTCACCTCAATTGGTCAACAAAGGAATCAAGAAGAAAGCTCTCAGAACATTCCCCACAGCGAGTTATTCAACTGAGCTGAAATTACCGGGTTTGGATACGGAGTGTATGATATGTCTCTCGGAATTTACAAAGGGTGAAAAGGTGCGCATTTTGCCTAAATGCAACCATGGTTTTCATGTTGGTTGCATTGACGAATGGCTAAAGGAACACTCATCATGTCCCAAGTGTAGACAGTGCCTTCTTGAAACTTGTCCAAAGATTGGTGGGTCGCAAGTGCAACCAATTGTGTTGCCAGTGCCGGAAATCACTATAAGGATTCAACCACTAGACCATGAAGCTGTTGAACTTAACTATAGGGAAGAAAGCAGATAA 606 0.4224 MYASTSFTSTLHHDLLVDSHTRRLLLQLPIDSNVGMILTVLLCTFICSLALISIVRCALRFSNAAINNGYASSSSSNSSPQLVNKGIKKKALRTFPTASYSTELKLPGLDTECMICLSEFTKGEKVRILPKCNHGFHVGCIDEWLKEHSSCPKCRQCLLETCPKIGGSQVQPIVLPVPEITIRIQPLDHEAVELNYREESR 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03181 201 FunFam RING-H2 finger protein ATL73 71 160 - -
Vifa6g03181 201 CDD RING-H2_EL5-like 112 155 - -
Vifa6g03181 201 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Vifa6g03181 201 SMART ring_2 113 154 IPR001841 -
Vifa6g03181 201 PANTHER RING-H2 FINGER PROTEIN ATL78 29 191 IPR044602 GO:0016567|GO:0016740
Vifa6g03181 201 Pfam Ring finger domain 112 155 IPR001841 -
Vifa6g03181 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 159 IPR013083 -
Vifa6g03181 201 SUPERFAMILY RING/U-box 95 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03181 Vifa-Chr6 1050720716 1050721321 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03181 30 159 C3H Transcription Factor Family AT3G10910 47.407 2.22e-36 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03181 K19040 - gmx:100780127 260.381