Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03171 ATGATTGAAGCGGGTCAAGTGAATGAAGTTCGTGAGTTTTTCAACCAAAAAGATTTTGATTACGATTACACTAGAGGGATACGAAGAGCCATTGGTGTACCTGAATTTGATGAGTTTTTTAGAGCGGAGTCACAAGGTGTAACAGATGGAAGAACTATGAAGAAGATTCTAGAAGTAGCTACTGATGCTCTTAAAGTGAATAATTGTAAGCTTGCGAGTAAACAAGTTAAGAAGATTCATAGGCTTTATGGTATATGGAAAAAGAACATGCACCGTCTTGATGCTACGGAGGTTGTGCTTAAGGAAGATAATTGGGAGGATCGTGTGTTGGCGAAGAGTCTTAGGATTGTACACAAGTTTTTATACGAGGATGGTGGTAATGGTGGTTGTATTGAGCCTGCAAAAATTCCGATTGTGGCAGGGTTTTCACATGTGCTTATCTGTCCAAAGCGCGAAGTTAAGCGTTTTCTTGATCTAACTGCTGAGGAGACTTCTGATTTATGGCTCACTGCACAAAAAGTCGGCAGGCAGCTTGAGAGCTACCACAAGGCTTCATCACTCAATTTGGCCATCCAAGATGGGCCCCAAGCAGGACAGACAGTACCTCATGTTAACATTCATGTTGTCCCGCGGAAAGGTGGTGATTTTGAGAAGAATGACGAGATATATGATGCAATGGATGAAAAGGAGAAGGAATTGAAGGAAAAACTTGATTTGGACAAGGAGAGGAAAGACACGAGCGCGGAAGAGATGTCACAAGAGGCAGAGGAATACAGAAAACTTTTCTTGTAA 792 0.4179 MIEAGQVNEVREFFNQKDFDYDYTRGIRRAIGVPEFDEFFRAESQGVTDGRTMKKILEVATDALKVNNCKLASKQVKKIHRLYGIWKKNMHRLDATEVVLKEDNWEDRVLAKSLRIVHKFLYEDGGNGGCIEPAKIPIVAGFSHVLICPKREVKRFLDLTAEETSDLWLTAQKVGRQLESYHKASSLNLAIQDGPQAGQTVPHVNIHVVPRKGGDFEKNDEIYDAMDEKEKELKEKLDLDKERKDTSAEEMSQEAEEYRKLFL 263
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03171 263 Gene3D - 134 263 IPR036265 -
Vifa6g03171 263 FunFam Fragile histidine triad 134 263 - -
Vifa6g03171 263 MobiDBLite consensus disorder prediction 234 255 - -
Vifa6g03171 263 Pfam HIT domain 144 212 IPR011146 GO:0003824
Vifa6g03171 263 Gene3D - 91 121 IPR027417 -
Vifa6g03171 263 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 1 90 - -
Vifa6g03171 263 ProSiteProfiles HIT domain profile. 144 218 IPR011146 GO:0003824
Vifa6g03171 263 PANTHER BIS(5'-ADENOSYL)-TRIPHOSPHATASE 143 262 - -
Vifa6g03171 263 Coils Coil 219 261 - -
Vifa6g03171 263 SUPERFAMILY HIT-like 144 262 IPR036265 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa6g03171 Vifa-Chr6 1047879103 1047880557 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03171 1 121 C2H2 Transcription Factor Family AT2G27760 29.054 1.88e-10 58.9
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03171 K01522 - gmx:100305764 206.838