Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03167 ATGGACTTCGATGAGTACGACTACTTGGAGAAGACGGTGGAGGAGCAGCCGGAAGACAAAGATTCTTCTAGAAAGAAGAAAATTGACACCGCCGACAATAAATCCGAGAGGACTTACCGGAAGCGCGACGTTGACGACGATCTGAACGGCGAAGATCGGCGGAGCAAAAGGTCTCGTGGCGAAGACGAGAACGGCTCTAAAAAAGATCGCGATAGAGACAGAGAGAAAGATCGTGACCGTGAACGATCTTCCGGCCGCCATAGGGAGAGGGAGAGGGAGAGGGATAAGGATGGAGAGAAAGGTAGTAGAGAGAAAGAGAGGGAGAGGGACGGAGAGAAAGGTAGTAGAGACAGAGATAGAGAGAAGGATAAGGATAGGGATAGAGAGAGGGAAAAGGAGAGGGAGAGGAGGGATAAGGAAAGGGAGAAGGAACGGGAAAGAAGAGAGAGGGAGAGAGAGAAGGAACGGGAGAGAGAAAAGGAGGAGAAAGAGAGACCTAGGAGGAGTATGAGTCGTCCTGAGAGAGATAGAGGAGAAAGAGTTGACAGAGAGCGAGATTTCGAAAATAGAGATGGCAGGAGATTCAGGGATAAGAAAGATAACGTGGAACCTGAAGCAGACCCAGAAAGGGATCAGAGAACTGTTTTTGCCTACCAGATGCCTTTAAAAGCAACAGAGAGAGATGTATACGAGTTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTCCGTCTAATCATGGATCGGAACTCGAGACGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTATCTCCGGCCAACTACTTCTTGGGCAACCTGTAATGGTGAAACCTTCTGAAGCTGAAAAAAATCTTGTTCAGTCTAATGCTTCCAGTGGAGCTGCTGGTGTAGTAGGACCATATGGAGCAGTGGACAGAAAATTGTATGTGGGGAATCTTCATTTCAACATGACTGAGGCTAATCTGCGAGAGATTTTTGAGCCATTTGGTCAGATTGAGGTTGTACAACTACCTCTTGACATGGAGACAGGACATTGCAAGGGTTTTGGGTTTGTTCAGTTTGCCCATCTTGAACATGCCAAGGCAGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGGACTATAAAAGTTTCATCTGTTACAGATCATGTTGGAAGTCAAGATACAACTGCAAAATCCGCAGACTTTGATGATGATGAAGGTGGATTGACTTTAAATGCTCACTCAAGAGCATTGCTTATGCAAAGGTTGGCTGGTGCTGAGATTCCCACAAGCATCGGTGTGCCAATTGTGAATGGGTCTGTTCCTGTTCAGCAGGCTTTTAGCATGCCTATTGGTAATCCAGGTGTTATACCTGCCTCTGGTCTACCAACACAAGTTTTGCCTACCCCTGTGGTAGAACCAGTAGGAATCCCCAGCGAGTGTTTATTATTGAAGAATATGTTTGATCCAAGCACCGAGACTGAACCAGATTTTGATATAGACATTAAAGAGGATGTCGAGGAAGAGTGTTCTAAGTATGGCCGAGTGAAGCATATTTATGTTGACAAAAGAAGTGCAGGTTTTGTGTACTTGCAGTTTGACACAGTGGAAGCATCAAGTGCTGCTCAACGGGCAATGCACATGAGATGGTTTGCACGCAGGTTGATTACAGCTATCTTCATGCAACCACATTTATATGAAGCTAAGTTTAACGGGGAATCTTGA 1740 0.4546 MDFDEYDYLEKTVEEQPEDKDSSRKKKIDTADNKSERTYRKRDVDDDLNGEDRRSKRSRGEDENGSKKDRDRDREKDRDRERSSGRHRERERERDKDGEKGSREKERERDGEKGSRDRDREKDKDRDREREKERERRDKEREKERERREREREKEREREKEEKERPRRSMSRPERDRGERVDRERDFENRDGRRFRDKKDNVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIAISGQLLLGQPVMVKPSEAEKNLVQSNASSGAAGVVGPYGAVDRKLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQDTTAKSADFDDDEGGLTLNAHSRALLMQRLAGAEIPTSIGVPIVNGSVPVQQAFSMPIGNPGVIPASGLPTQVLPTPVVEPVGIPSECLLLKNMFDPSTETEPDFDIDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLQFDTVEASSAAQRAMHMRWFARRLITAIFMQPHLYEAKFNGES 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03167 579 CDD RRM1_RBM39_like 214 286 - -
Vifa6g03167 579 SUPERFAMILY RNA-binding domain, RBD 205 298 IPR035979 GO:0003676
Vifa6g03167 579 CDD RRM3_RBM39_like 484 566 - -
Vifa6g03167 579 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 290 IPR000504 GO:0003723
Vifa6g03167 579 Coils Coil 122 165 - -
Vifa6g03167 579 FunFam Splicing factor, CC1-like protein 480 579 - -
Vifa6g03167 579 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 575 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vifa6g03167 579 FunFam Splicing factor CC1-like 137 298 - -
Vifa6g03167 579 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 393 IPR000504 GO:0003723
Vifa6g03167 579 SUPERFAMILY RNA-binding domain, RBD 315 568 IPR035979 GO:0003676
Vifa6g03167 579 MobiDBLite consensus disorder prediction 1 213 - -
Vifa6g03167 579 Gene3D - 206 300 IPR012677 -
Vifa6g03167 579 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 408 503 IPR029123 -
Vifa6g03167 579 NCBIfam splicing factor, CC1-like family 102 575 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vifa6g03167 579 Gene3D - 480 578 IPR012677 -
Vifa6g03167 579 SMART rrm1_1 316 389 IPR000504 GO:0003723
Vifa6g03167 579 SMART rrm1_1 486 563 IPR000504 GO:0003723
Vifa6g03167 579 SMART rrm1_1 214 286 IPR000504 GO:0003723
Vifa6g03167 579 FunFam Splicing factor CC1-like 299 404 - -
Vifa6g03167 579 Gene3D - 311 407 IPR012677 -
Vifa6g03167 579 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 220 281 IPR000504 GO:0003723
Vifa6g03167 579 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 387 IPR000504 GO:0003723
Vifa6g03167 579 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 508 561 IPR000504 GO:0003723
Vifa6g03167 579 MobiDBLite consensus disorder prediction 13 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03167 Vifa-Chr6 1047474871 1047480577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03167 287 388 Eukaryotic Initiation Factors Gene Family AT4G34110 31.068 2.50e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03167 K13091 - gmx:100793461 685.641