Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03164 ATGTCGGCTATTCACTGCTTTGTTTTTAACCTTTTGCTCAACACCGACGAGGTTGAAATAATTGCAAAACCGTCGTCTTGTTTCCCTCCACACGAATGCCACCAATATGGTGGCATTCACACTTCCACTCTTTTGAGTTTTGACCCGTCACTGGTACTAATCCTTAATAAAACTTCAATGCTTAGCCATGTCAACTGGTTAGCAATTAGTATCAAGAATCTATCTATATATATAGATGGAGAGATGTCGGCTATGATCTCTGCTTTAACACATGTCATATGTGGTGATGATCACAACAATGATGACGATGCTTTGAATCAGAATATGAATCATGATATTAAGCCGTTTGTTTCTGCAATAGAATCGTCAACTTCTTTGTCTTATGGTGATAGTTCTTCTGCTCTCAAGAGAAGAAGGGAAGATGGTGGATTCTTTGACAATAAGCATCAAGTTGGAGAACGTTCGAACAAATGGACGAATACAGTAACAACCACAGAGAGGAACCAAAGTGAAGAAACTATATATGAATACAGAACAGACAATAATAATGTGCCAAATGAAGATGAACCAAAAAGAAAATACAGAGGAGTGAGACAGAGGCCATGGGGAAAATGGGCTGCTGAGATAAGAGATCCTTTCAAAGCTACAAGAGTATGGTTAGGAACATTTGAAACAGCTGAAGATGCAGCCAAAGCCTATGATCAAGCTGCATTGCGTTTTAGAGGGAACAAAGCTAAACTCAACTTCCCTGAAAATGTTAGACTCAAGCAACAATCTTTTGTTGATCCACCAATGGTTCAGAGTGAAGAATCTCTTTATACTTTGGAAGGTTCAAATAAGTTTTATGATTATTTTCATGGTCAGAACATTCCCATGGCTTCTTCTTTTCAGAGTTCAATGGCACCATCAGCTTCATATTCTTTTTCTTCTTCTAATTCTCCACAGACAACTTCTTCAGTTCCTTCTGTTTATTCTACTCAGTTGCCAGCATGGTCTTCTAGTTATAGCACCTCTCCCTCAGGCTGA 1026 0.3879 MSAIHCFVFNLLLNTDEVEIIAKPSSCFPPHECHQYGGIHTSTLLSFDPSLVLILNKTSMLSHVNWLAISIKNLSIYIDGEMSAMISALTHVICGDDHNNDDDALNQNMNHDIKPFVSAIESSTSLSYGDSSSALKRRREDGGFFDNKHQVGERSNKWTNTVTTTERNQSEETIYEYRTDNNNVPNEDEPKRKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFETAEDAAKAYDQAALRFRGNKAKLNFPENVRLKQQSFVDPPMVQSEESLYTLEGSNKFYDYFHGQNIPMASSFQSSMAPSASYSFSSSNSPQTTSSVPSVYSTQLPAWSSSYSTSPSG 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03164 341 ProSiteProfiles AP2/ERF domain profile. 193 250 IPR001471 GO:0003700|GO:0006355
Vifa6g03164 341 CDD AP2 193 252 IPR001471 GO:0003700|GO:0006355
Vifa6g03164 341 SUPERFAMILY DNA-binding domain 193 251 IPR016177 GO:0003677
Vifa6g03164 341 Gene3D AP2/ERF domain 192 252 IPR036955 GO:0003700|GO:0006355
Vifa6g03164 341 MobiDBLite consensus disorder prediction 301 323 - -
Vifa6g03164 341 FunFam Ethylene-responsive transcription factor 2 192 251 - -
Vifa6g03164 341 PRINTS Ethylene responsive element binding protein signature 216 232 IPR001471 GO:0003700|GO:0006355
Vifa6g03164 341 PRINTS Ethylene responsive element binding protein signature 194 205 IPR001471 GO:0003700|GO:0006355
Vifa6g03164 341 PANTHER DNA-BINDING DOMAIN 157 309 IPR044808 GO:0003700|GO:0009873
Vifa6g03164 341 SMART rav1_2 193 256 IPR001471 GO:0003700|GO:0006355
Vifa6g03164 341 Pfam AP2 domain 193 242 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03164 Vifa-Chr6 1046375227 1046376464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03164 181 254 AP2-EREBP Transcription Factor Family AT5G13330 73.333 1.71e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa6g03164 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03164 - - tpra:123913316 293.508