LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa6g03164	ATGTCGGCTATTCACTGCTTTGTTTTTAACCTTTTGCTCAACACCGACGAGGTTGAAATAATTGCAAAACCGTCGTCTTGTTTCCCTCCACACGAATGCCACCAATATGGTGGCATTCACACTTCCACTCTTTTGAGTTTTGACCCGTCACTGGTACTAATCCTTAATAAAACTTCAATGCTTAGCCATGTCAACTGGTTAGCAATTAGTATCAAGAATCTATCTATATATATAGATGGAGAGATGTCGGCTATGATCTCTGCTTTAACACATGTCATATGTGGTGATGATCACAACAATGATGACGATGCTTTGAATCAGAATATGAATCATGATATTAAGCCGTTTGTTTCTGCAATAGAATCGTCAACTTCTTTGTCTTATGGTGATAGTTCTTCTGCTCTCAAGAGAAGAAGGGAAGATGGTGGATTCTTTGACAATAAGCATCAAGTTGGAGAACGTTCGAACAAATGGACGAATACAGTAACAACCACAGAGAGGAACCAAAGTGAAGAAACTATATATGAATACAGAACAGACAATAATAATGTGCCAAATGAAGATGAACCAAAAAGAAAATACAGAGGAGTGAGACAGAGGCCATGGGGAAAATGGGCTGCTGAGATAAGAGATCCTTTCAAAGCTACAAGAGTATGGTTAGGAACATTTGAAACAGCTGAAGATGCAGCCAAAGCCTATGATCAAGCTGCATTGCGTTTTAGAGGGAACAAAGCTAAACTCAACTTCCCTGAAAATGTTAGACTCAAGCAACAATCTTTTGTTGATCCACCAATGGTTCAGAGTGAAGAATCTCTTTATACTTTGGAAGGTTCAAATAAGTTTTATGATTATTTTCATGGTCAGAACATTCCCATGGCTTCTTCTTTTCAGAGTTCAATGGCACCATCAGCTTCATATTCTTTTTCTTCTTCTAATTCTCCACAGACAACTTCTTCAGTTCCTTCTGTTTATTCTACTCAGTTGCCAGCATGGTCTTCTAGTTATAGCACCTCTCCCTCAGGCTGA	1026	0.3879	MSAIHCFVFNLLLNTDEVEIIAKPSSCFPPHECHQYGGIHTSTLLSFDPSLVLILNKTSMLSHVNWLAISIKNLSIYIDGEMSAMISALTHVICGDDHNNDDDALNQNMNHDIKPFVSAIESSTSLSYGDSSSALKRRREDGGFFDNKHQVGERSNKWTNTVTTTERNQSEETIYEYRTDNNNVPNEDEPKRKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFETAEDAAKAYDQAALRFRGNKAKLNFPENVRLKQQSFVDPPMVQSEESLYTLEGSNKFYDYFHGQNIPMASSFQSSMAPSASYSFSSSNSPQTTSSVPSVYSTQLPAWSSSYSTSPSG	341

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa6g03164	341	ProSiteProfiles	AP2/ERF domain profile.	193	250	IPR001471	GO:0003700\|GO:0006355
	Vifa6g03164	341	CDD	AP2	193	252	IPR001471	GO:0003700\|GO:0006355
	Vifa6g03164	341	SUPERFAMILY	DNA-binding domain	193	251	IPR016177	GO:0003677
	Vifa6g03164	341	Gene3D	AP2/ERF domain	192	252	IPR036955	GO:0003700\|GO:0006355
	Vifa6g03164	341	MobiDBLite	consensus disorder prediction	301	323	-	-
	Vifa6g03164	341	FunFam	Ethylene-responsive transcription factor 2	192	251	-	-
	Vifa6g03164	341	PRINTS	Ethylene responsive element binding protein signature	216	232	IPR001471	GO:0003700\|GO:0006355
	Vifa6g03164	341	PRINTS	Ethylene responsive element binding protein signature	194	205	IPR001471	GO:0003700\|GO:0006355
	Vifa6g03164	341	PANTHER	DNA-BINDING DOMAIN	157	309	IPR044808	GO:0003700\|GO:0009873
	Vifa6g03164	341	SMART	rav1_2	193	256	IPR001471	GO:0003700\|GO:0006355
	Vifa6g03164	341	Pfam	AP2 domain	193	242	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa6g03164	Vifa-Chr6	1046375227	1046376464	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa6g03164	181	254	AP2-EREBP Transcription Factor Family	AT5G13330	73.333	1.71e-34	124

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Vifa6g03164		AP2	1.4e-14	CL0081