Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03157 ATGGGATGTGTTAGTAGTAAGTACACTCCCCCTCGAAACCGAAACCGACATGTTGAGAGGTTCAAAGATCAGTATGCACTCAAACCTATCATCCATAACAGGAATCATCCATCCAAACATGTCCAAGTGAAGACTAAGAAGAGAGTTGTGATTGTGAATACTACTACTGCAACAGAAGAGGGAGATAGGATTGATGATAAGGTAAAGGATGTAGCGAGAGATATTGATGATGATAAGTCTGAGGAAAAGAAGAAGAAGATGAATGCAATATATGATGTTAAAGTGGAAGAAGACGAGTGGCCCAAATGGCTGGTTGATAATATCTCTCAAAACGTTTTAGCTACTTTGATTCGCAAGACTGCTGATTCCTATGAAAAACTAGGAAAGGTAGGACGTGGAACATATAGCAATGTATATAAAGCTAGAGATAAGGACAGTGGAAAGATAGTTGCTTTGAAGAAGGTAAGATTTGACACTTCTGATTCTGAAAGCATCAAGTTTATGGCAAGGGAGATTACGATACTGCAGACTTTGGATCATCCCAATGTTATCAAACTTGAAGGACTAGCAACATCAAGGATGCAATATAGTCTTTATTTAGTCTTTGAATACATGCAATGTGATCTTACTAGGATTATCTCACGCCCTACAGAGAGACTCACTGAACCACAGATCAAATGTTACATGCAACAACTGCTTTTGGGACTTCAATATTGTCATGAGAGAGGAGTTATGCATAGAGATATTAAAGCTTCAAATTTGTTAATAGATAAAAAAGGGGTGTTAAAAATTGCTGATTTTGGGCTTGCGAATTCTTTAAAAGTAAAACCTAAAGGACCTCTTACAAATAGAGTTGTGACACTTTGGTATAGAGCTCCTGAACTTCTTCTAGGTTCAACTGATTATGATTATAGCATTGATATATGGAGTGTAGGTTGTTTGTTGGCTGAAATGTTTATTGGAAGACCAATTATGCCTGGGAGAACAGAGATTGAACAGCTTCATATGATATACAAACTTTGTGGTTCACCTTCAGAAGATTACTTGATAAAAATGAAGCTAAAGACAAGCTTTCGGCCACCACAACGTTATAAAGCTAGTTTTGAAGAAAACTTTCAGGATTTTCCTTTGTCTGCTCTTGATCTCTTGACTACGCTTCTTGATTTTCACTCCCAAAATCGTGGCACTGCTGCCTCTGCTCTTCAAACTGAATTCTTCAAATCTCATCCATTAGCATGTGACATCTCAGAATTACCGGTGATAATCAATAAAGGTGATGATGAACGATCTCAAAATAAGAGACGCAAAAGGCGCAAAGGTTTGAAAAAAGGGCAATTATCTAAAAGAAGTGAAAGCAATTTAAGCCTGTCAGGAATGAATCAAACTGCTGAACAAGGCAAGACAGATTCAGAAACATCAAAGGAGGAGAAGGGTCTAGGACAAACCATGCCGGGACAAGAAACAGGAAATAGTGGAAGCAGCAGATCTTCATCAATATTTACTAGCGAAAGGAGCTTGAATGCATCTATATCCCCGGTTTTTCTCTCCAGCAGTAAAATATCCCCCAAAACTGAAGGTCATCCTAATGCTCTTAAGAATATAAAGAACTACACACTCTTACAGGCATCTATCCTTGATATGATCAACCCAAAAGAAGGCAACGATTTTGGTCAGTTTCGCAGGTCCTTCTCTACATTGGACTTTCGGCTTGATCCTGAGAAGCTATCAAGTCTCTACGGATCCAAGTTGGACCATGAAGTGTGA 1764 0.3855 MGCVSSKYTPPRNRNRHVERFKDQYALKPIIHNRNHPSKHVQVKTKKRVVIVNTTTATEEGDRIDDKVKDVARDIDDDKSEEKKKKMNAIYDVKVEEDEWPKWLVDNISQNVLATLIRKTADSYEKLGKVGRGTYSNVYKARDKDSGKIVALKKVRFDTSDSESIKFMAREITILQTLDHPNVIKLEGLATSRMQYSLYLVFEYMQCDLTRIISRPTERLTEPQIKCYMQQLLLGLQYCHERGVMHRDIKASNLLIDKKGVLKIADFGLANSLKVKPKGPLTNRVVTLWYRAPELLLGSTDYDYSIDIWSVGCLLAEMFIGRPIMPGRTEIEQLHMIYKLCGSPSEDYLIKMKLKTSFRPPQRYKASFEENFQDFPLSALDLLTTLLDFHSQNRGTAASALQTEFFKSHPLACDISELPVIINKGDDERSQNKRRKRRKGLKKGQLSKRSESNLSLSGMNQTAEQGKTDSETSKEEKGLGQTMPGQETGNSGSSRSSSIFTSERSLNASISPVFLSSSKISPKTEGHPNALKNIKNYTLLQASILDMINPKEGNDFGQFRRSFSTLDFRLDPEKLSSLYGSKLDHEV 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03157 587 ProSitePatterns Protein kinases ATP-binding region signature. 130 153 IPR017441 GO:0005524
Vifa6g03157 587 Gene3D Transferase(Phosphotransferase) domain 1 207 446 - -
Vifa6g03157 587 PANTHER CELL DIVISION PROTEIN KINASE 122 411 - -
Vifa6g03157 587 SUPERFAMILY Protein kinase-like (PK-like) 118 412 IPR011009 -
Vifa6g03157 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
Vifa6g03157 587 MobiDBLite consensus disorder prediction 477 500 - -
Vifa6g03157 587 SMART serkin_6 124 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03157 587 MobiDBLite consensus disorder prediction 426 500 - -
Vifa6g03157 587 ProSiteProfiles Protein kinase domain profile. 124 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03157 587 FunFam Mitogen-activated protein kinase 205 421 - -
Vifa6g03157 587 Gene3D Phosphorylase Kinase; domain 1 112 206 - -
Vifa6g03157 587 Pfam Protein kinase domain 124 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03157 587 MobiDBLite consensus disorder prediction 447 467 - -
Vifa6g03157 587 FunFam probable serine/threonine-protein kinase At1g54610 111 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03157 Vifa-Chr6 1043524645 1043527171 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03157 119 528 Core Cell Cycle Gene Families AT5G10270 39.683 5.45e-94 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vifa6g03157 Pkinase 3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03157 K08819 - gmx:102667260 722.62