Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03142 ATGCCTTATATTTACAACGCTCTGATAGTTCAAGGTCGAGATACGGTTGGCCAACAAATTAACGTAACGTGTGAAGTACAGCAATTATTAGGAAATAATAGAATTAGAGTTGTAGCTATGAGTGCTACAGATGGTCTAAATAGAGGAATGGAAGTGATTGACATGGGAGTTGCTCTAAGTGTTCTAGTCGGTGGAGCAACCCTAGGTCGAATTTTCAACGTGCTTGGAGAGCCTATTGATAATTTGGGTCCTGTAGATACTCGCACAACATCTCCTATGCATAGATCTGCGCCTGCCTTTATACAGTTAGATACACAATTATCCATTTTTGAAACAGGACTTAAAGTAGTCGATCTTTTAGCTCCTTATCATCGTGGCGGAAAAATAGGACTTTTCGGTGGAGCTGGGGTAGGTAAAACAGTTCTCATTATGGAATTGATCAATAACATTGCCAAAGCTCATGGAGGTGTATTCGTATTTGGCAGAGTATGTGAGCGTACTCGTGAGGGAAATGACCTTTATATGGAAATGAAAGAATCCGGAGACGTCCTTCTATTTATCGACAATATCTTCCGTTTTGTCCAAGCCGGATCCGAAGTATCCTCCTTATTGGGCCGAATGCCTTCCGTTGTGGGTTATCAACCCACCCTGCGTACTGAAATGGGTGCTTTACAAGAAAGAATTACTTCTACCAAAGAAGGGTCTATAACTTCTATTCAAGCAGTTTATGTACCTGCAGACGATTTGACTGATCCTGCTCCTGCCACGACATTTGCACATTTGGATACAACTACTATACTATCAAGAGGATTAGCTGCCAAAGGTATCTATCCAGCAGTAAATCCTTTAGATTCAACGTCAACCATGCTCCAACCTCGCATCGTCGGTGAAGAACATTATGAAACTGCGCAAAGAGTGAAACAAATGTTACAACGTTACAAAGAACTTCAGGACATTATATATATTCTTGGGTTGGACGAATTATCCGAAGAGGATCGCTTAACCGTAGCAAGAGCACGAAAAATTGAACGTTTCTTATCACAACCTTTTTTTGTAGCAGAAGTATTTACCGGTTCCCCAGGGAAATATGTTAGTCTAGCATAA 1104 0.4094 MPYIYNALIVQGRDTVGQQINVTCEVQQLLGNNRIRVVAMSATDGLNRGMEVIDMGVALSVLVGGATLGRIFNVLGEPIDNLGPVDTRTTSPMHRSAPAFIQLDTQLSIFETGLKVVDLLAPYHRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVFVFGRVCERTREGNDLYMEMKESGDVLLFIDNIFRFVQAGSEVSSLLGRMPSVVGYQPTLRTEMGALQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDTTTILSRGLAAKGIYPAVNPLDSTSTMLQPRIVGEEHYETAQRVKQMLQRYKELQDIIYILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVSLA 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03142 367 Gene3D - 182 287 IPR027417 -
Vifa6g03142 367 SMART AAA_5 125 271 IPR003593 GO:0016887
Vifa6g03142 367 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 1 56 IPR036121 GO:0046034|GO:1902600
Vifa6g03142 367 CDD ATP-synt_F1_beta_C 294 367 - -
Vifa6g03142 367 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 292 IPR027417 -
Vifa6g03142 367 ProSitePatterns ATP synthase alpha and beta subunits signature. 278 287 IPR020003 GO:0005524
Vifa6g03142 367 Gene3D - 1 57 - -
Vifa6g03142 367 CDD F1-ATPase_beta_CD 60 292 - -
Vifa6g03142 367 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 290 366 - -
Vifa6g03142 367 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 180 287 IPR000194 GO:0005524
Vifa6g03142 367 CDD ATP-synt_F1_beta_N 1 56 - -
Vifa6g03142 367 Gene3D - 290 367 IPR024034 -
Vifa6g03142 367 Pfam ATP synthase alpha/beta family, beta-barrel domain 2 56 IPR004100 GO:0046034|GO:1902600
Vifa6g03142 367 Gene3D - 59 181 IPR027417 -
Vifa6g03142 367 FunFam ATP synthase subunit beta 290 367 - -
Vifa6g03142 367 PANTHER ATP SYNTHASE 182 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03142 Vifa-Chr6 1039742689 1039743930 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03142 37 344 Primary Pumps ATPases(2) AT1G20260 23.810 7.22e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03142 K02112 - syn:slr1329 548.51