Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03127 ATGGCGCCGAAGGAGAGAGCACCTAGGGTTAGCAGAAACCCCGATCTAATCCGAGGAATTGGAAAATTCTCAAAGTCTCAGATGTACCACAAGAGGGGTATCTGGGCTATCAAGGCCAAAAACGGCGGCGTTTTTCCTCGTCATGATCCCAAACCTAAACCTGAATCTCCTGCTGAGAAACCTCCGAAGTTTTACCCAGCTGATGATGTCAAGAAACCCCTTCTTAACAAGCACAAACCTAAACCTACCAAGCTCAGGGCTAGTATTACCCCTGGAACAGTGCTGATTCTTCTTGCTGGAAGATTCAAGGGAAAGAGGGTTGTGTTTTTGAAGCAGCTTCCTTCTGGATTGCTTCTTGTAACCGGTCCTTTCAAAATTAATGGAGTTCCCTTGAGACGTGTGAATCAGTCATATGTGATTGGCACATCCACCAAAGTAGATATCTCTGGTGTCAATGTGAGCAACTTTGATGATAAGTATTTCTCAAAGGATGCCAAGAAAAAGAAGAGCAAAGGTGAAGGCGAATTCTTTGAGTCTGACAAAGAGGAGAAAAAAGTTTTACCTCAGGAGAAGAAAGATGAACAGAAAACTGTTGATGCCGCATTGATTAAAGCGATTGAGAGCATTCCGGATTTGAAGACTTATCTTGGTGCCAGGTTTTCTCTCAAGGCCGGCGTGAAGCCACATGAGCTAGTCTTCTAG 702 0.4444 MAPKERAPRVSRNPDLIRGIGKFSKSQMYHKRGIWAIKAKNGGVFPRHDPKPKPESPAEKPPKFYPADDVKKPLLNKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVSNFDDKYFSKDAKKKKSKGEGEFFESDKEEKKVLPQEKKDEQKTVDAALIKAIESIPDLKTYLGARFSLKAGVKPHELVF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03127 233 CDD KOW_RPL6 81 233 IPR041997 -
Vifa6g03127 233 MobiDBLite consensus disorder prediction 40 85 - -
Vifa6g03127 233 PANTHER 60S RIBOSOMAL PROTEIN L6 7 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Vifa6g03127 233 FunFam 60S ribosomal protein L6 87 171 - -
Vifa6g03127 233 Gene3D - 87 170 IPR014722 -
Vifa6g03127 233 MobiDBLite consensus disorder prediction 44 76 - -
Vifa6g03127 233 MobiDBLite consensus disorder prediction 172 194 - -
Vifa6g03127 233 SUPERFAMILY Translation proteins SH3-like domain 87 173 IPR008991 -
Vifa6g03127 233 Pfam Ribosomal protein L6e 126 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Vifa6g03127 233 Pfam Ribosomal protein L6, N-terminal domain 3 61 IPR005568 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03127 Vifa-Chr6 1037093369 1037094724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03127 1 233 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 80.258 1.49e-123 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03127 K02934 - nnu:104591219 383.645