Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03125 ATGGAAAATCTTTTTGATGATATTGCTCCTACTCCTCCTACTACACGTGCTAGACCTGGTGCCAGGTTTGCGCCTAAGGCTAAACCGAAGCAACCGCCTCGAAAGAATGTATCTGCATCAAAAGATGACAACAATGTGCATCTTGATTCATCTACCACTCACAAACAATCCGAAGGAGTTTCTCAGATTGAGTCTCATAATGCAGTTGCTGTAAGTTCCTCAATTGAAGAACCTATCAAGTCTGATCAGAATGAATTGTATAATGTGGCCGCCCTGTCTACTATCTCCTCAACCATAGTTAGGATGGAAGAACTGCCTCAAATTGGGGAAGGTTCAGTTCTCGGTACGGACAAAAGTTTGCAAGTTATTGATAATTCATTGGAAGTTTGCTTAAATGCGGGCTTCAAAAGTGCTTCAGGAGACACTATCACTGCAATTCCTGAGAGTAACATTCATTCAAGTTTTGAGTTTGGAAAGGTATTGTCTGCCGAAATTGAGTTGGATCCTTTCAGCATTATCCTCCCTGATAATGGCATTGGGAATGCTCGTAAGTTTCAACCCAAGGTTAAGTCACGACCTAGAGTCAGCAATACACCAGCTATTGCTTCTGCTTCATCTGGTGGCAAGAGTAGGCCGGAATCACAGGAAGGTGCAGAGTTGAATCCTGACTGCGAAATGAGTAGTCCCACATTGGCTGACTTTTTGCAGCAAGACGGGACTGGAGAGAAAGAAGTCACTATTGAGACAGTAAAATCTCCAAAGAAGCATAAAAGATCTTCTACTACTGGCGTGGAGGATAAAGGTGCTAAAACCTCAAGGCAGACAAGAAAACAAGCAGCTCGTAAACTTGCTATAAGCTCATTGAGTAAGGCTATTGAGGATGATGATGTCCTCGACCCTCCTTATGATTTTGCTGGAGATGAAGTTGAAGAAAACAATGATGAGGACGAAGTGGTTTGTTCACCCAAAAAGAAAAAAACATCAACAAATTCAAAGAAGAAATCTGTGGCTAAAAATGGAAAAACATCTGGAAAACGCAAGAAGGCTAATGGTGATATTGAAAAGGTAACTGATGAAGCTCCTAAAAAGTTCCCGCATTCATCTCGGCGAAGAAGAAGTGTGGACAAGGCTCTGCTGGAGGATGAATTTCTTGATCAGCGAACATTACCTATTAGGGATATTATTTTACTTGCAGAGTATAAGGAGCGATTAGCGAAAAAGGAGGCAGCAACTTCTAAAACATCTTCCACCAATCAAAGTGATGGGGATTTTCTTCATGAGGTTGATGTTAATAATGAAGAGGAGTTTTTTGGTTCAGATGATGAATATAGAGACCCTGATGACGATGATCAGGTAAGTGAGAGGTTTACATCCACTGCCCCCTTGTTGAATTACCAGTCTTTCATGGACAAGGCACCTAGGGGAAAATGGTCAAAGCAAGATACTGAAGTGTTTTATGAGGCTGTTAGGCAGTTTGGCACAGATTTTTCTATGATACAACAGCTTTTCCCTGATAAAACGCGTCATCAAGTTAAGTTGAAGTACAAGAAGGAAGAGCGGCAACATCCTTTACAGTTATCTGATGCTGTGAATAATCGCTCAAAAGATCTCTCTTTTTTTAAATTGGTGGTTGAGAGGCAGAAACAAAACTCTAATAAGGAAGAACAAGATACGGTTGAAGATGCCTCAGATTTAATGCTGGGGGAGGAGGCTGAGAACCCGACATCGGAAACTAATGAAGAGGTTGCAACAACTAAGCAGGAGCTGGAGCAGGATCACATAGATGTTACAAATCAAGAAGATTCTATGGCATATCCAATTCCAGAGCAATCTGATGATAGTGAAGATGACTTACTAAAATGGTCACAGTATCAAAGTGCTATTTAG 1887 0.4123 MENLFDDIAPTPPTTRARPGARFAPKAKPKQPPRKNVSASKDDNNVHLDSSTTHKQSEGVSQIESHNAVAVSSSIEEPIKSDQNELYNVAALSTISSTIVRMEELPQIGEGSVLGTDKSLQVIDNSLEVCLNAGFKSASGDTITAIPESNIHSSFEFGKVLSAEIELDPFSIILPDNGIGNARKFQPKVKSRPRVSNTPAIASASSGGKSRPESQEGAELNPDCEMSSPTLADFLQQDGTGEKEVTIETVKSPKKHKRSSTTGVEDKGAKTSRQTRKQAARKLAISSLSKAIEDDDVLDPPYDFAGDEVEENNDEDEVVCSPKKKKTSTNSKKKSVAKNGKTSGKRKKANGDIEKVTDEAPKKFPHSSRRRRSVDKALLEDEFLDQRTLPIRDIILLAEYKERLAKKEAATSKTSSTNQSDGDFLHEVDVNNEEEFFGSDDEYRDPDDDDQVSERFTSTAPLLNYQSFMDKAPRGKWSKQDTEVFYEAVRQFGTDFSMIQQLFPDKTRHQVKLKYKKEERQHPLQLSDAVNNRSKDLSFFKLVVERQKQNSNKEEQDTVEDASDLMLGEEAENPTSETNEEVATTKQELEQDHIDVTNQEDSMAYPIPEQSDDSEDDLLKWSQYQSAI 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03125 628 SUPERFAMILY Homeodomain-like 475 523 IPR009057 -
Vifa6g03125 628 MobiDBLite consensus disorder prediction 326 344 - -
Vifa6g03125 628 MobiDBLite consensus disorder prediction 548 628 - -
Vifa6g03125 628 Gene3D - 477 559 - -
Vifa6g03125 628 MobiDBLite consensus disorder prediction 410 425 - -
Vifa6g03125 628 MobiDBLite consensus disorder prediction 184 372 - -
Vifa6g03125 628 PANTHER RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B 18 627 - -
Vifa6g03125 628 MobiDBLite consensus disorder prediction 345 372 - -
Vifa6g03125 628 MobiDBLite consensus disorder prediction 43 65 - -
Vifa6g03125 628 MobiDBLite consensus disorder prediction 583 597 - -
Vifa6g03125 628 MobiDBLite consensus disorder prediction 298 315 - -
Vifa6g03125 628 MobiDBLite consensus disorder prediction 1 65 - -
Vifa6g03125 628 MobiDBLite consensus disorder prediction 406 428 - -
Vifa6g03125 628 MobiDBLite consensus disorder prediction 244 273 - -
Vifa6g03125 628 Pfam Myb DNA-binding like 467 551 IPR039467 -
Vifa6g03125 628 MobiDBLite consensus disorder prediction 191 212 - -
Vifa6g03125 628 CDD SANT 476 517 IPR001005 -
Vifa6g03125 628 ProSiteProfiles SANT domain profile. 476 520 IPR017884 -
Vifa6g03125 628 SMART sant 473 521 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03125 Vifa-Chr6 1037018260 1037022740 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa6g03125 Myb_DNA-bind_7 9.7e-27 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03125 K15198 - gmx:100792788 390.963