Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03124 ATGGAAAATCTTTTTGATGATATTGCTCCTACTCCTCCTACTACACGTGCTAGACCTGGTGCCAGGTTTGCGCCTAAGGCTAAACCGAAGCAACCGCCTCGAAAGAATGTATCTGCATCAAAAGATGACAACAATGTGCATCTTGATTCATCTACCACTCACAAACAATCCGAAGGAGTTTCTCAGATTGAGTCTCATAATGCAGTTGCTGTAAGTTCCTCAATTGAAGAACCTATCAAGTCTGATCAGAATGAATTGTATAATGTGGCCGCCCTGTCTACTATCTCCTCAACCATAGTTAGGATGGAAGAACTGCCTCAAATTGGGGAAGGTTCAGTTCTCGGTACGGACAAAAGTTTGCAAGTTATTGATAATTCATTGGAAGTTTGCTTAAATGCGGGCTTCAAAAGTGCTTCAGGAGACACTATCACTGCAATTCCTGAGAGTAACATTCATTCAAGTTTTGAGTTTGGAAAGGTGGGGGAGGTATTGTCTGCCGAAATTGAGTTGGATCCTTTCAGCATTATCCTCCCTGATAATGGCATTGGGAATGCTCGTAAGTTTCAACCCAAGGTTAAGTCACGACCTAGAGTCAGCAATACACCAGCTATTGCTTCTGCTTCATCTGGTGGCAAGAGTAGGCCGGAATCACAGGAAGGTGCAGAGTTGAATCCTGACTGCGAAATGAGTAGTCCCACATTGGCTGACTTTTTGCAGCAAGACGGGACTGGAGAGAAAGAAGTCACTATTGAGACAGTAAAATCTCCAAAGAAGCATAAAAGATCTTCTACTACTGGCGTGGAGGATAAAGGTGCTAAAACCTCAAGGCAGACAAGAAAACAAGCAGCTCGTAAACTTGCTATAAGCTCATTGAGTAAGGCTATTGAGGATGATGATGTCCTCGACCCTCCTTATGATTTTGCTGGAGATGAAGTTGAAGAAAACAATGATGAGGACGAAGTGGTTTGTTCACCCAAAAAGAAAAAAACATCAACAAATTCAAAGAAGAAATCTGTGGCTAAAAATGGAAAAACATCTGGAAAACGCAAGAAGGCTAATGGTGATATTGAAAAGGTAACTGATGAAGCTCCTAAAAAGTTCCCGCATTCATCTCGGCGAAGAAGAAGTGTGGACAAGGCTCTGCTGGAGGATGAATTTCTTGATCAGCGAACATTACCTATTAGGGATATTATTTTACTTGCAGAGTATAAGGAGCGATTAGCGAAAAAGGAGGCAGCAACTTCTAAAACATCTTCCACCAATCAAAGTGATGGGGATTTTCTTCATGAGGTTGATGTTAATAATGAAGAGGAGTTTTTTGGTTCAGATGATGAATATAGAGACCCTGATGACGATGATCAGGTAAGTGAGAGGTTTACATCCACTGCCCCCTTGTTGAATTACCAGTCTTTCATGGACAAGGCACCTAGGGGAAAATGGTCAAAGCAAGATACTGAAGTGTTTTATGAGGCTGTTAGGCAGTTTGGCACAGATTTTTCTATGATACAACAGCTTTTCCCTGATAAAACGCGTCATCAAGTTAAGTTGAAGTACAAGAAGGAAGAGCGGCAACATCCTTTACAGTTATCTGATGCTGTGAATAATCGCTCAAAAGATCTCTCTTTTTTTAAATTGGTGGTTGAGAGGCAGAAACAAAACTCTAATAAGGAAGAACAAGATACGGTTGAAGATGCCTCAGATTTAATGCTGGGGGAGGAGGCTGAGAACCCGACATCGGAAACTAATGAAGAGGTTGCAACAACTAAGCAGGAGCTGGAGCAGGATCACATAGATGTTACAAATCAAGAAGATTCTATGGCATATCCAATTCCAGAGCAATCTGATGATAGTGAAGATGACTTACTAAAATGGTCACAGTATCAAAGTGCTATTTAG 1896 0.414 MENLFDDIAPTPPTTRARPGARFAPKAKPKQPPRKNVSASKDDNNVHLDSSTTHKQSEGVSQIESHNAVAVSSSIEEPIKSDQNELYNVAALSTISSTIVRMEELPQIGEGSVLGTDKSLQVIDNSLEVCLNAGFKSASGDTITAIPESNIHSSFEFGKVGEVLSAEIELDPFSIILPDNGIGNARKFQPKVKSRPRVSNTPAIASASSGGKSRPESQEGAELNPDCEMSSPTLADFLQQDGTGEKEVTIETVKSPKKHKRSSTTGVEDKGAKTSRQTRKQAARKLAISSLSKAIEDDDVLDPPYDFAGDEVEENNDEDEVVCSPKKKKTSTNSKKKSVAKNGKTSGKRKKANGDIEKVTDEAPKKFPHSSRRRRSVDKALLEDEFLDQRTLPIRDIILLAEYKERLAKKEAATSKTSSTNQSDGDFLHEVDVNNEEEFFGSDDEYRDPDDDDQVSERFTSTAPLLNYQSFMDKAPRGKWSKQDTEVFYEAVRQFGTDFSMIQQLFPDKTRHQVKLKYKKEERQHPLQLSDAVNNRSKDLSFFKLVVERQKQNSNKEEQDTVEDASDLMLGEEAENPTSETNEEVATTKQELEQDHIDVTNQEDSMAYPIPEQSDDSEDDLLKWSQYQSAI 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03124 631 ProSiteProfiles SANT domain profile. 479 523 IPR017884 -
Vifa6g03124 631 MobiDBLite consensus disorder prediction 413 428 - -
Vifa6g03124 631 MobiDBLite consensus disorder prediction 348 375 - -
Vifa6g03124 631 MobiDBLite consensus disorder prediction 247 276 - -
Vifa6g03124 631 SUPERFAMILY Homeodomain-like 478 526 IPR009057 -
Vifa6g03124 631 MobiDBLite consensus disorder prediction 194 215 - -
Vifa6g03124 631 SMART sant 476 524 IPR001005 -
Vifa6g03124 631 MobiDBLite consensus disorder prediction 301 318 - -
Vifa6g03124 631 MobiDBLite consensus disorder prediction 551 631 - -
Vifa6g03124 631 MobiDBLite consensus disorder prediction 409 431 - -
Vifa6g03124 631 MobiDBLite consensus disorder prediction 43 65 - -
Vifa6g03124 631 PANTHER RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B 18 630 - -
Vifa6g03124 631 MobiDBLite consensus disorder prediction 187 375 - -
Vifa6g03124 631 MobiDBLite consensus disorder prediction 1 65 - -
Vifa6g03124 631 MobiDBLite consensus disorder prediction 586 600 - -
Vifa6g03124 631 CDD SANT 479 520 IPR001005 -
Vifa6g03124 631 Gene3D - 480 562 - -
Vifa6g03124 631 Pfam Myb DNA-binding like 470 554 IPR039467 -
Vifa6g03124 631 MobiDBLite consensus disorder prediction 329 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03124 Vifa-Chr6 1037018260 1037022740 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa6g03124 Myb_DNA-bind_7 9.8e-27 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03124 K15198 - gmx:100792788 390.963