Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03123 ATGGAAGATCTCACGTATCAATTCAATGACCCCTATGAATGTTCCATTGATCCAAGTTTCTTCATTATGAGTAACCCCACACTAGACGATTTAGTCATTAACAACATTGACATTAACAATGGATCCACTTCAATGTTCCAACAAAATGTAACTAATTTATCCATTAATAACAATAATCTACCCCACCAGAATCACCATGCAGTGTTTCAAGAAAACCACCATGATAGCATTAGTGATTCATTTTTCGATGGAGTGCCTCAAGAAATGCATGAGGATCAAACAATTCAACCTGTAAATCAGATTCCGGTTTTACCTAATGGAACCGATGCAATGACAATTGATCAATGGCCTTCTGCACCACTCCCATATTTTTGCAGTTGTTGTCAACTTCTCAGAGAAATCATACACGCTAATGGTGTTCAATTTGAAAAGCTTGAGATTCATGGAAGGCTAGGTTTGATTACACATGCAATTCATCATCAGACACCTGTTAATGGAAACCCACCAATCAACCAAATGATTGATTTTAGCAGGAGAAACCTTGAGGAAATAAAGAAATTTCTGGCGCAATACTGCATGGATCGTATTTTAGCAGGATATTTTATTCTACAAGATCCCTTGTCTTCATATTATGAGACTCTTTGCACTGGATTGGATTGGGTTGAAGATTTTAACATTGATGGTATTCTTGATAATAATAATCAAAATAATTCAGATGAGATGGTAGAACAAGAGCAGCAAATGGGTGAGAATGGAACTCCTACCGCAACACTTGATAAAAAGAACCTCTCGAAACAGAGGAAAAAAGCGGGAAAATTGACATTAACTAATTTATGTGATCATTTTCATCTACCTATTGAGGAAGCATCGGAAAGAGTGGAATTGTGTCCAACAGTTCTCAAGAAAACATGCCGCAAAGCAGGATTAACAAGATGGCCTCACAGAAAGGTGAAAAGCCTTTTGAAGCAGATAGCATTGCTAGAAAGTCAATTGGGAAGACAAGATGCAGCGACAAGGGCAAGGACTGAAAAGGATATTAGCGAGCTTAAGGAAGAAATGATTAGGCATTGTGGTGGACTTATACCAACGGCCATGTCTAACATCGCTGCCTTCTTGCCACCACAACATCAGCAACGTAGGTAG 1143 0.3841 MEDLTYQFNDPYECSIDPSFFIMSNPTLDDLVINNIDINNGSTSMFQQNVTNLSINNNNLPHQNHHAVFQENHHDSISDSFFDGVPQEMHEDQTIQPVNQIPVLPNGTDAMTIDQWPSAPLPYFCSCCQLLREIIHANGVQFEKLEIHGRLGLITHAIHHQTPVNGNPPINQMIDFSRRNLEEIKKFLAQYCMDRILAGYFILQDPLSSYYETLCTGLDWVEDFNIDGILDNNNQNNSDEMVEQEQQMGENGTPTATLDKKNLSKQRKKAGKLTLTNLCDHFHLPIEEASERVELCPTVLKKTCRKAGLTRWPHRKVKSLLKQIALLESQLGRQDAATRARTEKDISELKEEMIRHCGGLIPTAMSNIAAFLPPQHQQRR 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03123 380 MobiDBLite consensus disorder prediction 240 263 - -
Vifa6g03123 380 Pfam RWP-RK domain 273 320 IPR003035 -
Vifa6g03123 380 ProSiteProfiles RWP-RK domain profile. 254 340 IPR003035 -
Vifa6g03123 380 PANTHER PROTEIN RKD4 116 352 IPR044607 GO:0003700
Vifa6g03123 380 MobiDBLite consensus disorder prediction 240 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03123 Vifa-Chr6 1036998989 1037000681 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03123 233 320 AtRKD Transcription Factor Family AT4G35590 38.636 9.12e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vifa6g03123 RWP-RK 5.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03123 - - psat:127102209 644.425