Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03109 ATGGCAGGTAACAAGAGATCAAGCCAAACAAGTCCTGTAGGAAGTCCAACATCCGGCAACATCTCCGACAGTTCATCCTCAAAAGAACAAGACAGGTTCCTCCCAATCGCGAACGTGAGCCGCATAATGAAAAGAGCATTACCAGCCAACGCAAAAATCTCAAAAGAAGCGAAAGAAACCGTTCAAGAATGTGTGTCTGAGTTCATAAGTTTCATAACCGGTGAAGCTTCTGATAAGTGTCAAAGAGAAAAGAGAAAAACCATTAACGGTGATGATCTTCTTTGGGCTATGACAACACTTGGTTTTGAAAACTATGTTGGTCCTTTGAAAGTTTATCTTAATAATTATAGAGAAACTGAAGGAGAAAAGAGTAACTCATCAGCATCATCTATGGTTAGTACTAAACAAGATGATTATTATAATCATGATCATGGTTCTTCAAATGGTGGATTTTATTCTCAAGTTGTTAATGATAATGGTTCAAAGAGGTTTCAAGAGATTGTGGATTATAGAGTGATTGGTCAAAGTGGTGGTGGTGGTGGTGATGAAATAGAAAATGCAATTGCAAGTGGTAATGGAATTATGCCACCAAACCTACGTTATAGGGTTGAATGGTAG 618 0.3819 MAGNKRSSQTSPVGSPTSGNISDSSSSKEQDRFLPIANVSRIMKRALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLNNYRETEGEKSNSSASSMVSTKQDDYYNHDHGSSNGGFYSQVVNDNGSKRFQEIVDYRVIGQSGGGGGDEIENAIASGNGIMPPNLRYRVEW 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03109 205 ProSitePatterns NF-YB/HAP3 subunit signature. 64 80 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vifa6g03109 205 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Vifa6g03109 205 PRINTS CCAAT-binding transcription factor subunit A signature 99 117 - -
Vifa6g03109 205 PRINTS CCAAT-binding transcription factor subunit A signature 61 79 - -
Vifa6g03109 205 SUPERFAMILY Histone-fold 30 129 IPR009072 GO:0046982
Vifa6g03109 205 MobiDBLite consensus disorder prediction 120 140 - -
Vifa6g03109 205 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 33 97 IPR003958 -
Vifa6g03109 205 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 145 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vifa6g03109 205 Gene3D Histone, subunit A 20 145 IPR009072 GO:0046982
Vifa6g03109 205 MobiDBLite consensus disorder prediction 1 32 - -
Vifa6g03109 205 MobiDBLite consensus disorder prediction 120 136 - -
Vifa6g03109 205 FunFam Nuclear transcription factor Y subunit B-3 22 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03109 Vifa-Chr6 1031689621 1031690238 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03109 25 127 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.408 2.78e-64 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vifa6g03109 CBFD_NFYB_HMF 1e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03109 K08065 - gmx:100797721 256.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03109 6 1031689621 1031690238 Vifa6g03109 6 1031689621 1031690238 ECH