Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03101 ATGATTTTGATTTGTATACCAATTTTTCTACTTTCTCTTGCTTTTATATGGCTATGGGGAACCAACAAAAATACAAATAAACTTCCACCTGGTCCAAAAGGGTTGCCAATTTTAGGCAGCCTTCTCGAATTAGGACCAAACCCACATCGTGATCTTCACCAGTTATCCCAAAAATATGGACCTATCATGCACTTAAGGTTAGGTTTAGTACCAACCATAGTTGTTTCTTCACCTCAAGCAGCTGAACTTTTTCTCAAAACTCATGATCTTGTCTTTGCTAGTAGACCACAAAGTGAGGCAGTGAAACACATCTTTTGGGAACAGAAGAGTTTGAGTTTTGCTGAATATGGTATTTATTGGCGCAACATTAGAAAAATGTGCACTTCAGAATTGTTGAGCCATGCAAAAATAAACTCTTTTAGACCCGTGAGAGAACAAGAGCTTGACCTATTGATTACGTTTTTGAGAGAAGAATCCATTGATGGAACAAAATTTGACTTAAGTGCTAAAATTTCTTCACTCATAACTGATATAAATTGTAGAATGATTTTGGGAAAAAAGTACATGGATAAGGATTTGAATGAGAAAGGGTTTAAGGCTGTGATGCAAGAAGGAATGCAATTATCAGGTACTCCCAATATTGGTGATTATATTCCTTACATTGGAAAACTTGATTTACAAAGGCTAACTAAACGTATGAAGGGAGTTGGAAAAATCTTTGATGATTTTTTTGAGAAAATAATTGATGAGCATATTCAATTTGGCAATAAAGATGATAAGACTACGGATTTTGTAGATGTTATGTTGGGCTTTGTTGGTGTTCAAGAATCTGAATACCGAATTGAACGATCTAATATCAAAGCCATTTTGCTGGATATGCTAGCAGCTTCAACGGATACTACCGCAACAACAATTGAGTGGACAATTTCAGAGATATTAAAGAATCCAAGAGTGATGGAAAAGGTGCAAACTGAGTTAAAAACCATAGTGGGTATGAAGAGGAAAGTGGAAGAATCAGATTTGGACAAGTTGGAATATTTGGACATGGTTATAAAAGAAAGCTTTAGGCTCCATCCACCAGGACCCCTATTAATACCACACCAATCTATAGAAGATTGCATGGTTGGAGAGTTTTTCATACCAAAAAAATCAAGGATCATTGTGAATGCATGGTCAATTATGCGAGACCCGAATGCTTGGAACGACGCGGAGAAATTTTGGCCTGAGAGATTTGAAGGAAGCAACATAGATGTTAAAGGGCGTGATTATCATCTCATACCATTTGGTTCTGGTAGAAGGGGTTGTCCTGGATTGAACTTGGCTATGACTGTGGTTCGTTTGGTAGTAGCCCAACTTGTGCATTGTTTTGATATGAAATTGCCTAATAATGTGTTATTAAGTGATTTGGACATGACAGAAGAGTTTGGCCTTACGGTTCCTAGATCCAATCATCTAATTGTCATCCCTACTTATCGTCTTTGTAATGTTAGCAATTAG 1497 0.3687 MILICIPIFLLSLAFIWLWGTNKNTNKLPPGPKGLPILGSLLELGPNPHRDLHQLSQKYGPIMHLRLGLVPTIVVSSPQAAELFLKTHDLVFASRPQSEAVKHIFWEQKSLSFAEYGIYWRNIRKMCTSELLSHAKINSFRPVREQELDLLITFLREESIDGTKFDLSAKISSLITDINCRMILGKKYMDKDLNEKGFKAVMQEGMQLSGTPNIGDYIPYIGKLDLQRLTKRMKGVGKIFDDFFEKIIDEHIQFGNKDDKTTDFVDVMLGFVGVQESEYRIERSNIKAILLDMLAASTDTTATTIEWTISEILKNPRVMEKVQTELKTIVGMKRKVEESDLDKLEYLDMVIKESFRLHPPGPLLIPHQSIEDCMVGEFFIPKKSRIIVNAWSIMRDPNAWNDAEKFWPERFEGSNIDVKGRDYHLIPFGSGRRGCPGLNLAMTVVRLVVAQLVHCFDMKLPNNVLLSDLDMTEEFGLTVPRSNHLIVIPTYRLCNVSN 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03101 498 CDD CYP71-like 58 485 - -
Vifa6g03101 498 Pfam Cytochrome P450 29 480 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03101 498 PRINTS E-class P450 group I signature 435 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03101 498 PRINTS E-class P450 group I signature 174 192 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03101 498 PRINTS E-class P450 group I signature 425 435 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03101 498 PRINTS E-class P450 group I signature 348 366 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03101 498 PRINTS E-class P450 group I signature 56 75 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03101 498 PRINTS E-class P450 group I signature 285 302 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03101 498 PRINTS E-class P450 group I signature 389 413 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03101 498 PRINTS E-class P450 group I signature 305 331 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03101 498 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 428 437 IPR017972 GO:0005506|GO:0016705
Vifa6g03101 498 Gene3D Cytochrome P450 20 491 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03101 498 SUPERFAMILY Cytochrome P450 29 492 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03101 498 PRINTS P450 superfamily signature 296 313 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03101 498 PRINTS P450 superfamily signature 435 446 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03101 498 PRINTS P450 superfamily signature 349 360 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03101 498 PRINTS P450 superfamily signature 426 435 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03101 498 FunFam Cytochrome P450 83B1 16 488 - -
Vifa6g03101 498 PANTHER CYTOCHROME P450 93A3-LIKE 3 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03101 Vifa-Chr6 1029725365 1029727050 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03101 8 490 Cytochrome P450 AT3G26300 38.866 4.96e-128 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03101 K20562 - gmx:100809526 754.592