Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03100 ATGAAAAAATTGCAAAAAGAGTTGGAAATTGTTGTAGGTTTGAAGAGAAAAGTGAATGAATCAGATTTGAATAAATTGGAGTATCTAGACATGGTTATAAAAGAGAGTCTTAGACTTCATCCAGTGGCACCACTTTTAATACCACACCAATCTATAGAAGATTGCATGGTTGAAGACTTTTTCATACCTAAAAAATCAAGGATCATTGTGAATGCATGGTCAATTATGCGAGACCCGAAAGCGTGGCCGGACCCGAATAATTTTTATCCCGAGAGATTTGAAGGAAGCAATGTAGATGTTAGAGGGCATGACTTTGAACTCATACCATTTGGTTCTGGTCGAAGAGGTTGTCCCGGATTGCAACTAGGTTTAACTGTGATTCGCTTGGTGGTGGCTCAGCTTGTGCATTGCTTTGATTGGGAATTGCTTGATAACATGTTACCATGTGATTTGGACATGATTGAGGAGTTTGGCCTTACTATGCCAAGAGCCAATCATTTGATTGCTGTCCCTGTTTATCGTCTTTTTAGTGATGCTGATTAG 543 0.3923 MKKLQKELEIVVGLKRKVNESDLNKLEYLDMVIKESLRLHPVAPLLIPHQSIEDCMVEDFFIPKKSRIIVNAWSIMRDPKAWPDPNNFYPERFEGSNVDVRGHDFELIPFGSGRRGCPGLQLGLTVIRLVVAQLVHCFDWELLDNMLPCDLDMIEEFGLTMPRANHLIAVPVYRLFSDAD 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03100 180 PRINTS P450 superfamily signature 31 42 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03100 180 PRINTS P450 superfamily signature 108 117 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03100 180 PRINTS P450 superfamily signature 117 128 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03100 180 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 110 119 IPR017972 GO:0005506|GO:0016705
Vifa6g03100 180 Pfam Cytochrome P450 1 163 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03100 180 PRINTS E-class P450 group I signature 107 117 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03100 180 PRINTS E-class P450 group I signature 117 140 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03100 180 PRINTS E-class P450 group I signature 71 95 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03100 180 PRINTS E-class P450 group I signature 30 48 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03100 180 FunFam Predicted protein 1 169 - -
Vifa6g03100 180 Gene3D Cytochrome P450 1 173 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03100 180 PANTHER CYTOCHROME P450 93A3-LIKE 1 175 - -
Vifa6g03100 180 SUPERFAMILY Cytochrome P450 1 173 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03100 Vifa-Chr6 1028199710 1028200252 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03100 1 175 Monolignol Biosynthesis Gene Families AT4G36220 54.545 1.54e-64 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03100 K20562 - mtr:11439949 306.99