Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03095 ATGGATTCTTCATCTTCCCAATTTGTTTCATCAAGAAATATTGGTGTGTATGATCCTATGCATCAATTTAGTATATGGGAAGAACATTTCAAGACTAGTGGTGACTTAGGTGCATCTATGTCTTTGATTGAGGAGGCTGACATGAAGATAAATAATCAGGATGCTTCTTATGGAGTATTAGGAACATCTATCAAGTTTGATCAAGAAGGTAACAAAATTACTAATAAGATGCAAAGACGTCTCGCGCAAAATCGAGAGGCTGCCCGTAAGAGTCGTTTGAAGAAAAAGGCTCATATTCAACAGTTAGAATCGTGTCGCTTAAAGCTGATGCAGGTAGAACAAGAGCTTGATCATACAAGACAACAGGGATTGTATATAGGTGGTGGATTGGATTCTAATAATTCGGGTTTTGCTGGTTCTGCAAATTCAGAAATAGCAACTTTTAAGACGAAATATCAACACTGGGTGGAAGAGCAAAACAGACAAGTTTTGGAATTAAAAAGTGCTTTAAGTGATCATATCAGTGACATACAGATTGGGGAGCTTGTAAATGGCATCATGAATCACTATTTCAAACTCTTTTGCATGAAATCTGATGCTGCAAAAGTAGATGTTTTCTATGTTATAACCGGCATGTGGAAAACAACGGCTGAAGGGTTTTTCTTGTGGATTGGAGGTTTTCGCCCCTCTGAACTTCTAAAGGTTTTGGTCCCTTTGATTGAGCCATTGACAGAGGAACAGCGGTTTAATGCATATAATCTTGAGAAGTCGTGCCAGCAAGCAGAAGATGCGCTCTCAAAAGGTATGGAAAAACTCCAGGGAATGCTTGTTGACACAGTTGCAGCCGGAAACTTCGTCGAAGGAGTTTACATTCCAGAGATGGCTACTGCAATAGAGAGGTTGGAAGCTCTAGCTAGCTTTGTGAACCAGGCTGATCACCTACGACAGGAAACCTTGCAGCAGATGTGTCGAATACTTACCATACGTCAAACTGCTCAATGGTTGCTTGCATTGGGTGAATATTTTCAACGCCTAAGGAATTTGAGCAAACTTTGGGCCGATCGATCTCGAGAAACTGCTTAG 1083 0.4054 MDSSSSQFVSSRNIGVYDPMHQFSIWEEHFKTSGDLGASMSLIEEADMKINNQDASYGVLGTSIKFDQEGNKITNKMQRRLAQNREAARKSRLKKKAHIQQLESCRLKLMQVEQELDHTRQQGLYIGGGLDSNNSGFAGSANSEIATFKTKYQHWVEEQNRQVLELKSALSDHISDIQIGELVNGIMNHYFKLFCMKSDAAKVDVFYVITGMWKTTAEGFFLWIGGFRPSELLKVLVPLIEPLTEEQRFNAYNLEKSCQQAEDALSKGMEKLQGMLVDTVAAGNFVEGVYIPEMATAIERLEALASFVNQADHLRQETLQQMCRILTIRQTAQWLLALGEYFQRLRNLSKLWADRSRETA 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03095 360 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 79 94 IPR004827 GO:0003700|GO:0006355
Vifa6g03095 360 PANTHER TRANSCRIPTION FACTOR TGA9 1 358 - -
Vifa6g03095 360 Pfam bZIP transcription factor 76 104 IPR004827 GO:0003700|GO:0006355
Vifa6g03095 360 FunFam BZIP family transcription factor 75 124 - -
Vifa6g03095 360 SMART brlzneu 72 154 IPR004827 GO:0003700|GO:0006355
Vifa6g03095 360 Gene3D - 75 124 - -
Vifa6g03095 360 Pfam Seed dormancy control 164 237 IPR025422 GO:0006351|GO:0043565
Vifa6g03095 360 Coils Coil 95 122 - -
Vifa6g03095 360 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 74 116 IPR004827 GO:0003700|GO:0006355
Vifa6g03095 360 SUPERFAMILY Leucine zipper domain 76 111 IPR046347 GO:0003700|GO:0006355
Vifa6g03095 360 ProSiteProfiles DOG1 domain profile. 145 355 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03095 Vifa-Chr6 1027694504 1027696942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03095 1 358 Calmodulin-binding Proteins AT5G10030 59.945 1.78e-158 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa6g03095 DOG1 1.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03095 K14431 - gmx:100780003 518.85