Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03092 ATGACAGTTCTCTCTGAGCTCATATACCAGCTATATGTCAAAACAATAGTCCTATTCACATACATGCTAATAGAACTCATCCTCATCATTTGTTACCTAAAGTCTACAAAAAACCCAATCACCACAACCCAATACCTCAATTTCATCGAAGAGAAAAACCCAACAAGAAAGTTGAAGAAGCCTACAACAGAACACATAGATTGCATGGTATGTTTATCCGAGTTCAAGGAAGGAGACACTGTGAGGAACTTGAATTGCCAACACACCTTTCATAAGGATTGTTTAGATGAGTGGTTCTTGCAAGACCAATATTGTGCTACTTGTCCACTTTGCAGGAACAAGGTTTTGTCCGATGATGTTTCTTCAAAGTATTGTTTGCTTCAAAATCAGGTCGAGTTTGATGGGATTGATGATCACTTTTTGGATTTGCTATCTTCATTAAGAGATGGTGGTGATATTTGCTATAGATATCTCTGA 477 0.3753 MTVLSELIYQLYVKTIVLFTYMLIELILIICYLKSTKNPITTTQYLNFIEEKNPTRKLKKPTTEHIDCMVCLSEFKEGDTVRNLNCQHTFHKDCLDEWFLQDQYCATCPLCRNKVLSDDVSSKYCLLQNQVEFDGIDDHFLDLLSSLRDGGDICYRYL 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03092 158 ProSiteProfiles Zinc finger RING-type profile. 68 112 IPR001841 -
Vifa6g03092 158 PANTHER - 1 149 - -
Vifa6g03092 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 117 IPR013083 -
Vifa6g03092 158 Pfam Ring finger domain 67 112 IPR001841 -
Vifa6g03092 158 SUPERFAMILY RING/U-box 48 118 - -
Vifa6g03092 158 SMART ring_2 68 111 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03092 Vifa-Chr6 1025233164 1025233640 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03092 67 123 C3H Transcription Factor Family AT1G15100 56.140 5.76e-17 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03092 K16282 - gmx:102661133 212.616