Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03086 ATGGAAATTATAGGTCTTGTTCTAGTCTCTCTCTTGTTATCTTTTACCAAATATCCAATTCAATTGACACAAATTGATGCATTTTCATCCATTCAAGGAAGAGTCTTTGAAGAGTGTCTCTTCAGTGTAGATCTGAACAAGGGTCTCATCAATTTTGACTCAAGTGAAGACAAGGAGACAAAGCTGGCTACCACACTATCATCTTGGAGGCTTGCTGCCAATGGCGGCACCCATGCTTCCACTGATCTGGAAAGGAATGGTGACGGGAAGGCTCAAGATTCAGAGCCTCCAACTCCCCATTCTGTTCTGAAAATGGGATTGAGAGATCGTAGTAGCAGCATGGAGGATCCAGATGGGACATTGGCTAGTGTTGCGCAATGCATTGAGCAGCTGCGTCAGAGCTCGTCTTCTGTGCATGAGAAAGAGTATTCCTTAAGGCAGTTATTGGATCTTATAGATATGCGTGAAAATGCATTTAGTGCTGTTGGATCTCACTCTCAGGCTGTTCCAGTGCTTGTTTCCCTTCTCCGGTCAGGTTCGTTGAATGTGAAGATCCAGGCAGCAACTGTTTTGGGATCACTTTGTAAAGAAAATGAGCTGAGGGTGAAAGTCTTGCTTGGAGGCTGTATTCCTCCATTGCTTGGTCTCCTAAAGTCCAGTTCTACTGAAGCCCGAATTGCCGCTGCAAAGACTATATATGCTGTCTCTCAAGGTGGTGCAAAAGATCACGTTGGTTCCAAAATATTTTCAACTGAAGGAGTAGTACCCGTGCTTTGGGAGCAGTTGCGAGCTGGCCCGAAAACCGAAAATGCAGTTGAAACTTTATTGACAGGAACATTGAAAAATCTCTCCAACAGTGCTGAGGGATTCTGGAACTCAACAGTTCAATCTGGAGGAGTGGACATATTAGTGAAGTTATTGGCAACAGGGCAGCCTAGCACTTTAGCCAGTGTTTGCTTTTTACTTGCTTCTGTAATGATGGAGGATGCATCTGTTTGTTCGAAGGTGTTGAGCGCAGAGGTGACTAAACAACTTTTGAAACTGTTAGGCCCTGGTAATGATGACCTTGTTAGAGCTGAAGCAGCTGGTGCTCTTAAATCTCTATCTTCTCAGTGCAAAGAAGCCAGGCGAGAGATAGCCAGTTCTAATGGCATTCCTGCTCTGATCAATGCTACCATAGCTCCTTCGAAAGAATTCATGCAGGGTGAGTGTGCTCAAGCATTACAAGAGAATGCTATGTGCGCTTTAGCAAATATCTCTGGTGGTTTGTCTTATGTCATATCTAGCCTCGGTCAAAGCCTCGAGTCATGCTCTTCTCCTACACAAATTGCCGACACTTTAGGAGCAATAGCATCAGCTCTTATGATATATGATAACAAGGCCGAATCTACCAAACCGTCAGATCCTTTGGTGGTTGAAGAGACGTTACTCAAACAATTCAAACCTCGTTTGCCTTTCCTTGTGCTAGAACGGACCATTGAAGCTCTAGCTAGTTTATACGGTAATTCCATACTCACAACTAAACTAGCAAATTCCGATGCAAAACGTTTGCTTGTTGGTTTGATAACAATGGCTGCCAATGAAGTGCAAGATGAGCTTATAAAAGCTCTGTTGACTCTGTGCAAAAGTGAAGGCAGTCTATGGCGTGCACTTCAGGGTCGTGAAGGAGTTCAACTATTGATATCTCTTCTCGGCCTTTCATCAGAACAGCAGCAAGAATGTGCAGTTGCATTGCTTTGCCTTTTATCTAATGAAAATGATGAAAGTAAATGGGCAATTACCGCTGCTGGTGGTATACCTCCGCTTGTTCAAATTTTGGAGACAGGATCTGCAAAAGCAAAGGAAGATTCGGCTAGAATCCTTAAGAATTTGTGCAATCATAGTGAAGACATACGTGCTTGTGTTGAAAGCGCAGATGCTGTTCCTGCATTGTTGTGGCTATTGAAAAACGGAAGTCCTAATGGGAAGGATATTGCAGCAAAGACTATAAATCATTTAATTCATAAATCTGATACTACGACTATCAGTCAGCTTACAGCATTATTGACTAGTGAACTTCCTGATTCTAAGGTATATATTTTGGATGCTTTGAGAAGTATGCTTTGTGTTGCTCCTCTTAGCGACATTTTACGTGAAGGTAGTGCCTCCGGTGATGCATTTGACACCATGATAATGTTATTGAGCTCTAACAAGGAAGAGACTCAGGCAAAATCTGCATCAGCTCTGGCTGAAATTTTCGAAGCAAGGAAAGATTTGCGTGAAAGTAGCATTGCTGTCAGAGCTCTTTGTTCAGCCATGAAGCTGCTCAATGTTGAATCCGAAAGTATCCTAATGGAGTCCTCAAACTGCCTGGCTTCAATATTTCTTTCCATCAAAGAGAACAAGGATGTAGCAGCTCTTGCTAGAGATACATTAACCACCCTAGTTACTCTAGCTAACTCTTCAGTTTTGGAAGTGGCAGAGATGGCTATAGGTGCTGTAGCGAATCTTATTTTGGATACTGAAATAGCAAAGAAAGTTGTTCTAGAAGAAGTTATCTTGCCTGCCACCAGAGTATTACGTGAAGGCACGAATTCTGGAAAAACTCGTGCTGCAGCTGCTATCGCTCGCCTCTTACATTCTCAGAAAGTTGATAATGCTGTTACTGATTGTGTGAATCGCGCCGGCACTGTTCTTGCATTAGTTTCCTTTTTGGATTCTTCTGTCAATGAATCTGTTTCCACATCAGAGGCTCTAGAAGCACTTGTCATTCTTTCCAGGTCAGAAGAGACTGGTGCAAATATTAAACCAGCATGTGCAGTTTTAGCTGAATTCCCTCAAAGCATAATCCCAATAGTACTGTGCATTGTTAATTCAACACCGACATTGCAAGATAAAACAATCGAGATTTTATCTCGATTGTGTAAAGATCAGCCTGTTATTTTAGGAGATACTGTTGCATCTGCCTCTGGATGTATATCTTCAATAGCTAAGAGGGTAATTAGTTCCTCAAATGTAAAAGTCAAAATTGGTGGGGTAGCGCTTCTTATTTGTGCTGCAAAACTAAATCATCAGAGACTGGTGGAGAATATCAATATATCAAACTTGTCTGCTAACCTTATTCAGTCTCTAGTTGATATCCTTATCTCTGCACAGTCTTCTTTTGGTGATCACGGTGATGATGATGACAAGGAATCCATCAGCATATGCAGACCTACACAAGAAGAGGCCAACGGCCGGGAATCCAACACTGGAACTTCCATTATACGTGGTGTTGACTTAGCTATATGGTTGCTATCTATTCTTGCTCGTCATGATGAAAGAAATAAAGCTGCTATAATGAAGGCTGGAGCAATTGATGTTCTCGCCGACAAGATCTCAAATTGTTACTCACAGTATTCTCAGACTGAATACAAAGAAGATAGCAGCATGTGGATTTGTGCCTTGTTGTTGGCAATATTATTTCAAGACAGAGATATCATACGGGCACATTCAACCATAAAGTCTTTACCGGCACTTGCCAATTTATTGAAGTCAGATGAGTCGGCGAACAAGTATTTTGCTGCACAATCAATAGCGAGCCTTGTTTGCAATGGTAGCAGGGGAACACTTCTGTCTGTGGCAAATTCTGGGGCAGCAGGCGGACTTATCTCTTTGCTTGGCCGTGCTGATACTGATATGCAGGATCTTCTGGAATTGTCAGAGGAATTTGCTTTGGTTCGTTATCCTGATCAAGTGGCTCTAGAGAGGTTGTTTAGAGTTGATGATATAAGAGCTGGTGCCACTTCTCGAAAGGCAATTCCTGCTCTAGTTGATCTTCTCAAACCAATTCCAGGTCGCCCAGGGGCACCATTTTTAGCTCTCGGGATTTTGACTCAGCTTGGCAGAGATTGTCCGTCAAATAAGACTGTAATGGTAGAATCTGGGGCTTTAGAGGCTCTTACAAAGTATCTTTCCCTTGGTCCACAAGACGCAACCGAAGAAGCTGCTACAGATCTGCTAGGAATTCTCTTTAGTAGCGCTGATATACGAAAACATGACTCTGCATTTGGCGCTGTTAACCAACTTATAGCTGTCCTACGTTTAGGAGGAAGAGCTGCAAGGTTTAGTGCTGCAAAAGCATTGGAAAGTTTATTTTCTGCTGACCACATAAGAAATGCTGAGATTGCTAGACAAGCTATTCAACCCTTGGTAGAAATTCTTAGCACTGGTTCAGAAAGGGAGCAGCATGCTGCAATTGCTGCATTGATTGGGTTACTGAGTGAAAACCCATCTAGAGCACTTGCTGTTGCAGATGTTGAAATGAATGCAGTGGATGTTCTTTATAGGATCCTTTCGTCGAATTGTTCAATTGACCTGATAGGGGATGCTGCTGAGTTATGTTGTGCTCTTTTTGGAAATACAAGGATTCGGTCCACAACGGCTGCTACGCGATGTGTTGAACCGCTAATCTCTCTCCTTGCAACCGAGTTCAGTCCTGCTCATCATTCAGTTGTTCGGGCACTGGATAGGCTCGTTGACGATGAGCAACTGGCTGAATTAGTTGCCACACACAGTGCAGTTGTCCCTTTTGTTAGTCTACTGTCTGGTAGAAACTTTGTACTTCACGAGGCCATCTCCAGAGCTCTGGTCAAGTTAGGAAAAGACAGACCTGCTTGTAAAATGGAAATGGTAAAAGCTGGAGTCATTGAAAGCATACTGGACATCTTACATGAAGCCCCTGATTTTTTGTGTGCAGCTTTTGCAGAACTATTGCGTATATTAACAAATAATGCTACCATAGCTAAAGGACCATTGGCCGCCAAAGTTGTCGAACCCTTGTTTTTGTTGTTGGCAAGGCACGATTTTGCGCCCGACGGACAGCACAGCGCAATGCAGGTTTTGGTTAATATCGTAGAACATCCACAGTGTCGTGCTGACCATTCATTGACTTCTCGCAAAGCTATAGAACCACTTATCCCTTTGCTTGATTCACCGATATCAGTAGTGCAACAGTTGGCTGCTGAGCTGCTTTCACATCTGCTCCTAGAAGAACACTTTCAAAAGGATCCAGTGACACCGAAAGTAATTGCCCCTCTAATAAGAATTCTCAGTTCTGGTATACCTTTATTGCAGCAGAGAGCTGTTAAGGCCCTAGTTAGTATTGCTCTGACATGGCCAAACGAAATTGCCAAAGAGGGTGGTGTTGTTGAGATTTCCAAAGTGATATTGCAAGCTGATCCTTCGCTTCCACATGCTTTATGGGAATCCGCTGCGTCTGTTTTGTCAAGTATTCTGCAATTTAGCTCAGAATTCTACTTGGAAGTGCCCGTTGCTGTGTTGGTAAAGTTGCTTCGATCTGGCTCAGAGAGCACAGTTATCGGTGCGTTAAATGCGCTTCTGGTTTTGGAAAGTGATGATGGAACTAGTGCAGAATCTATGGCCGAAAGTGGTGCAATAGAGGCTCTCTTGGAGCTCCTAAGATCTCACCAGTGTGAGGAAATCGCTGCACGACTCTTAGAAGTATTGTTGAACAACGTGAAGATCAGAGATACGAAAGTTACTAAATCAGCCATCTTACCGTTATCACAGTATCTCTTGGACCCGCAAACCCAAGCACAGCACGCAAGGTTATTGGCAACTTTGGCCCTTGGGGATTTGTTCCAGAATGAGGCTCTTGCTCGAACAGGTGATGCGGTTTCTGCTTGTCGTGCTTTAGTGAACGTACTTGAAGACCAACCGACAGAAGAAATGAAAGTCGTAGCCATATGCGCTTTACAAAATCTTGTGATGTACAATCGATCAAATAGAAGAGCGGTTGCAGAGGCCGGTGGTGTTCAGGTTGTATTGGATCTGATAGGTTCAAGTAATCCTGAAACTTCTGTTCAGGCAGCAATGTTTATTAAACTTCTGTTCTCAAATAATACTATTCAAGAGTATGCTTCTAGCGAAACTGTCAGAGCAATCACTGCTACCATTGAAAAAGATTTATGGGCAAGTGGAACTGTGAACGAAGAATATCTGAAAGCATTAAATTCTTTATTTAGCAACTTTCCACGACTGAGAGCAACTGAACCGGCAACACTAAGCATTCCCCATCTGGTAACATCCTTAAAGACTGGTTCAGAGGCTTGTCAGGAAGCTGCCTTGGATGCACTTTTCCTGCTCAGACAAGCTTGGTCAGCATGCCCTGCCGAAGTATCAAGAGCTCAGTCAATTGCAGCTGCAGATGCTATTCCCTTTTTGCAGTACTTAATCCAGTCTGGCCCGCCTCGGTTTCAGGAGAAGGCAGAATTTTTATTACAGTGTTTGCCAGGGACATTGGTGGTGATCGTCAAGCGTGGTAACAATATGAAACAGTCTGTTGGAGTCCCTAGTGTTTACTGCAAGATTACACTTGGCCATAATCCGCCGAGGCTAACCAAGGTTGTCTCTACTGGTCCTAATCCGGAGTGGGATGAGAGCTTTACATGGTCCTTTGAGAGTCCTCCAAAAGGCCAAAAACTTCATATTTCTTGCAAAAACAAGAGCAAAGTGGGAAAGAGTAAATTTGGGAAAGTAACAATCCAAATTGATCGAGTGGTAATGCTCGGAGCCGTAGCTGGCGAATATACTCTGTTGCCTGCAAGTAAAAGTGGACCACCGAGGAATCTAGAAATTGAATTCCAATGGTCTAACAAGGCAAGTGATACAACAACTGATACAAATCAGCAGCCTCAGGGGACATGA 6687 0.4326 MEIIGLVLVSLLLSFTKYPIQLTQIDAFSSIQGRVFEECLFSVDLNKGLINFDSSEDKETKLATTLSSWRLAANGGTHASTDLERNGDGKAQDSEPPTPHSVLKMGLRDRSSSMEDPDGTLASVAQCIEQLRQSSSSVHEKEYSLRQLLDLIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSTEARIAAAKTIYAVSQGGAKDHVGSKIFSTEGVVPVLWEQLRAGPKTENAVETLLTGTLKNLSNSAEGFWNSTVQSGGVDILVKLLATGQPSTLASVCFLLASVMMEDASVCSKVLSAEVTKQLLKLLGPGNDDLVRAEAAGALKSLSSQCKEARREIASSNGIPALINATIAPSKEFMQGECAQALQENAMCALANISGGLSYVISSLGQSLESCSSPTQIADTLGAIASALMIYDNKAESTKPSDPLVVEETLLKQFKPRLPFLVLERTIEALASLYGNSILTTKLANSDAKRLLVGLITMAANEVQDELIKALLTLCKSEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILETGSAKAKEDSARILKNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKDIAAKTINHLIHKSDTTTISQLTALLTSELPDSKVYILDALRSMLCVAPLSDILREGSASGDAFDTMIMLLSSNKEETQAKSASALAEIFEARKDLRESSIAVRALCSAMKLLNVESESILMESSNCLASIFLSIKENKDVAALARDTLTTLVTLANSSVLEVAEMAIGAVANLILDTEIAKKVVLEEVILPATRVLREGTNSGKTRAAAAIARLLHSQKVDNAVTDCVNRAGTVLALVSFLDSSVNESVSTSEALEALVILSRSEETGANIKPACAVLAEFPQSIIPIVLCIVNSTPTLQDKTIEILSRLCKDQPVILGDTVASASGCISSIAKRVISSSNVKVKIGGVALLICAAKLNHQRLVENINISNLSANLIQSLVDILISAQSSFGDHGDDDDKESISICRPTQEEANGRESNTGTSIIRGVDLAIWLLSILARHDERNKAAIMKAGAIDVLADKISNCYSQYSQTEYKEDSSMWICALLLAILFQDRDIIRAHSTIKSLPALANLLKSDESANKYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGRADTDMQDLLELSEEFALVRYPDQVALERLFRVDDIRAGATSRKAIPALVDLLKPIPGRPGAPFLALGILTQLGRDCPSNKTVMVESGALEALTKYLSLGPQDATEEAATDLLGILFSSADIRKHDSAFGAVNQLIAVLRLGGRAARFSAAKALESLFSADHIRNAEIARQAIQPLVEILSTGSEREQHAAIAALIGLLSENPSRALAVADVEMNAVDVLYRILSSNCSIDLIGDAAELCCALFGNTRIRSTTAATRCVEPLISLLATEFSPAHHSVVRALDRLVDDEQLAELVATHSAVVPFVSLLSGRNFVLHEAISRALVKLGKDRPACKMEMVKAGVIESILDILHEAPDFLCAAFAELLRILTNNATIAKGPLAAKVVEPLFLLLARHDFAPDGQHSAMQVLVNIVEHPQCRADHSLTSRKAIEPLIPLLDSPISVVQQLAAELLSHLLLEEHFQKDPVTPKVIAPLIRILSSGIPLLQQRAVKALVSIALTWPNEIAKEGGVVEISKVILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVKLLRSGSESTVIGALNALLVLESDDGTSAESMAESGAIEALLELLRSHQCEEIAARLLEVLLNNVKIRDTKVTKSAILPLSQYLLDPQTQAQHARLLATLALGDLFQNEALARTGDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYNRSNRRAVAEAGGVQVVLDLIGSSNPETSVQAAMFIKLLFSNNTIQEYASSETVRAITATIEKDLWASGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEACQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPFLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIVKRGNNMKQSVGVPSVYCKITLGHNPPRLTKVVSTGPNPEWDESFTWSFESPPKGQKLHISCKNKSKVGKSKFGKVTIQIDRVVMLGAVAGEYTLLPASKSGPPRNLEIEFQWSNKASDTTTDTNQQPQGT 2228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03086 2228 Gene3D - 1428 1589 IPR011989 -
Vifa6g03086 2228 SUPERFAMILY ARM repeat 117 749 IPR016024 -
Vifa6g03086 2228 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 90 2213 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Vifa6g03086 2228 SMART arm_5 155 196 IPR000225 GO:0005515
Vifa6g03086 2228 SMART arm_5 1792 1831 IPR000225 GO:0005515
Vifa6g03086 2228 SMART arm_5 1501 1541 IPR000225 GO:0005515
Vifa6g03086 2228 SMART arm_5 372 421 IPR000225 GO:0005515
Vifa6g03086 2228 SMART arm_5 1246 1289 IPR000225 GO:0005515
Vifa6g03086 2228 SMART arm_5 197 237 IPR000225 GO:0005515
Vifa6g03086 2228 SMART arm_5 1374 1414 IPR000225 GO:0005515
Vifa6g03086 2228 SMART arm_5 628 668 IPR000225 GO:0005515
Vifa6g03086 2228 SMART arm_5 1631 1669 IPR000225 GO:0005515
Vifa6g03086 2228 SMART arm_5 1543 1583 IPR000225 GO:0005515
Vifa6g03086 2228 SMART arm_5 329 370 IPR000225 GO:0005515
Vifa6g03086 2228 SMART arm_5 878 920 IPR000225 GO:0005515
Vifa6g03086 2228 SMART arm_5 1291 1332 IPR000225 GO:0005515
Vifa6g03086 2228 SMART arm_5 1919 1959 IPR000225 GO:0005515
Vifa6g03086 2228 SMART arm_5 794 832 IPR000225 GO:0005515
Vifa6g03086 2228 SMART arm_5 586 626 IPR000225 GO:0005515
Vifa6g03086 2228 ProSiteProfiles C2 domain profile. 2073 2190 IPR000008 -
Vifa6g03086 2228 Gene3D - 110 476 IPR011989 -
Vifa6g03086 2228 Gene3D C2 domain 2092 2223 IPR035892 -
Vifa6g03086 2228 SUPERFAMILY ARM repeat 722 1125 IPR016024 -
Vifa6g03086 2228 MobiDBLite consensus disorder prediction 2198 2228 - -
Vifa6g03086 2228 Gene3D - 507 667 IPR011989 -
Vifa6g03086 2228 Gene3D - 672 1070 IPR011989 -
Vifa6g03086 2228 Pfam Armadillo/beta-catenin-like repeat 586 625 IPR000225 GO:0005515
Vifa6g03086 2228 Pfam Armadillo/beta-catenin-like repeat 165 195 IPR000225 GO:0005515
Vifa6g03086 2228 SMART C2_3c 2093 2189 IPR000008 -
Vifa6g03086 2228 MobiDBLite consensus disorder prediction 2208 2228 - -
Vifa6g03086 2228 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1442 1676 - -
Vifa6g03086 2228 SUPERFAMILY ARM repeat 1163 1630 IPR016024 -
Vifa6g03086 2228 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 597 639 IPR000225 GO:0005515
Vifa6g03086 2228 Coils Coil 358 378 - -
Vifa6g03086 2228 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2091 2210 IPR035892 -
Vifa6g03086 2228 MobiDBLite consensus disorder prediction 77 119 - -
Vifa6g03086 2228 Gene3D - 1593 2091 IPR011989 -
Vifa6g03086 2228 Gene3D - 1077 1427 IPR011989 -
Vifa6g03086 2228 SUPERFAMILY ARM repeat 1642 2088 IPR016024 -
Vifa6g03086 2228 CDD C2 2094 2184 - -
Vifa6g03086 2228 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 2092 2213 - -
Vifa6g03086 2228 Pfam C2 domain 2092 2183 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03086 Vifa-Chr6 1022862433 1022871931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03086 549 681 U-box Gene Family AT2G23140 39.259 9.39e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03086 - - cam:101494820 3743.74