Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03077 ATGACGAATCAAGTTCTACAAACTATATCCGAATGTCTTCACACGTTTTGCAGGAAGTGCATTTATGACAAAATTTCTGATGAGGATTTGGAATGCTGTCCAGAATGCAACATTGATTTGGGCTGTGTTCCACTTGAGAAACTAAGGCCGGACCACACTAAGCAAGATGTAAGGGCCAAGATTTTCCCCTTAAAGGGAAGAAAGGTGAAAGAACCTGAAGTTGTTGCGGCTTCAGTACCATTGCCAGCTAAAAGAAAAGAAAGATCTTTGTCGTCTTTGGTGGTCAACACACCAAGGGTATCGGCACAATCAACCATGACAGGAAGAAGAACAAAACCTACAAGAAAGGCTAGCAGTCTGCGGTCCTCTAGTTTTTCATTTGAAAGATTGATTAAAAAAGAGGAAGCATTATTGGACGACCGTCCCGAGAGTTCAAGCTCACCTGAAACTTCAAATAAGTTGCGCCAGAACAATGGACAGAGCGAGGGTAGTCAATCCACGCCAAATAAAGAAACAGAGAATGGTGCTGAAACATATGATGCAAAGTTGGATCTTTGGAAACCGCTGAATTGTTTAGTGGAAGTCGCAAGCAGGACTAAATCTTTCAAGTCTAATACACAAGGTTCCACTGCTAAACTTGAACCTATTCAAGTAAATGAAAGTGACTCTTCAAGTGCAGAAAATAAAAAATAA 693 0.4084 MTNQVLQTISECLHTFCRKCIYDKISDEDLECCPECNIDLGCVPLEKLRPDHTKQDVRAKIFPLKGRKVKEPEVVAASVPLPAKRKERSLSSLVVNTPRVSAQSTMTGRRTKPTRKASSLRSSSFSFERLIKKEEALLDDRPESSSSPETSNKLRQNNGQSEGSQSTPNKETENGAETYDAKLDLWKPLNCLVEVASRTKSFKSNTQGSTAKLEPIQVNESDSSSAENKK 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03077 230 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 7 227 IPR044807 GO:0004842
Vifa6g03077 230 MobiDBLite consensus disorder prediction 199 223 - -
Vifa6g03077 230 SUPERFAMILY RING/U-box 9 55 - -
Vifa6g03077 230 MobiDBLite consensus disorder prediction 136 174 - -
Vifa6g03077 230 MobiDBLite consensus disorder prediction 90 122 - -
Vifa6g03077 230 Pfam Zinc finger, C3HC4 type (RING finger) 8 36 IPR018957 GO:0046872
Vifa6g03077 230 ProSitePatterns Zinc finger RING-type signature. 12 21 IPR017907 -
Vifa6g03077 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 111 IPR013083 -
Vifa6g03077 230 MobiDBLite consensus disorder prediction 143 174 - -
Vifa6g03077 230 MobiDBLite consensus disorder prediction 199 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03077 Vifa-Chr6 1020545821 1020547869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03077 8 212 C3H Transcription Factor Family AT2G30580 56.481 3.54e-72 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03077 K16277 - gmx:100793731 348.977