Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03076 ATGGCGCTTGCTGGTTCTGAAATGGAGCTTAAACTTCAAGCTATAAACAACAAGAAAACCGCAATTTCAAGAAGCTGGATTTTTCTTGACCGTGATGGAAGAGACATGGTATTGGATGTGGATAAGTATGCTATTATGCGTCTGGTTGAAATTCACGCAAGAGATCTTCGAATTATGGATCCTCTTCTTTCTTATCCTTCTACCATTCTTGGTAGAGAGAAAGTGATTGTTCTCAATCTAGAGCATATAAAAGCTATTATCACTGCTGAAGAAGTTTTGGTTAGAGACCCAATGGATGAGGATGTTGTGCCTGTTGTTGAAGAGCTTCGAAGAAGGTTACCAGTGAAAGTAAATGTTGGTGGTCAAGGACAAGGAGAAGAAGAGTCGTGTGCTCAAGACGGTGGAGAAGATAATGAATTTCCATTTGAGTTTCGGGCGTTGGAAGTTGTATTAGAGGCAACTTGTAGTTTTCTTGATGCAAGGACAAGAGAGTTGGAGACTAATGTCTATCCTGCTTTGGATGAACTAACATCTAAGATTAGTAGTCGTAATTTGGATAAAGTGCGGAAATTAAAAAGTGCGATGACTAGGTTAACAAATCGTGTTCATAAGATAAGAGAGGAACTAGAAAATCTACTTGATGATGATGATGACATGGCTGAACTTTACTTATCAAGAAAGTCATCTATTTCATCGTCTCCCTCGTCGAGTAGCTCTGAAGGTCCCAATTGGCATCATAGTCCAAATCAAGGTTCAAAAATACACCGATCAAGCAGAGGAAGCACGACAACACTTCACGGAGAAAATGATGTTGAAGAGCTTGAAATGTTACTAGAGGCCTATTTCATACAAATCGACGGGACATTAAATAAATTGACCACGGTGCGTGAATATATCGACGACACAGAAGATTACATCAACATACAACTTGATAATCACCGAAATCAACTGATTCAGCTAGAGTTGTTCTTAAGTTCCGGGACTGTTTGTTTATCAATATATTCACTGGTGGCTGCGATATTTGGTATGAATATTCCATATACATGGAGAGAAGGTCATGGATATGTATTTAAATGGGTGGTGATTCTTACGGGAATGGCTTGTGGAACATTCTTTCTGTCCATAGTATCGTATGCTCGACGCAAAGGTCTTGTTGGATCTTGA 1164 0.3935 MALAGSEMELKLQAINNKKTAISRSWIFLDRDGRDMVLDVDKYAIMRLVEIHARDLRIMDPLLSYPSTILGREKVIVLNLEHIKAIITAEEVLVRDPMDEDVVPVVEELRRRLPVKVNVGGQGQGEEESCAQDGGEDNEFPFEFRALEVVLEATCSFLDARTRELETNVYPALDELTSKISSRNLDKVRKLKSAMTRLTNRVHKIREELENLLDDDDDMAELYLSRKSSISSSPSSSSSEGPNWHHSPNQGSKIHRSSRGSTTTLHGENDVEELEMLLEAYFIQIDGTLNKLTTVREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVAAIFGMNIPYTWREGHGYVFKWVVILTGMACGTFFLSIVSYARRKGLVGS 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03076 387 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 323 373 IPR045863 -
Vifa6g03076 387 Gene3D - 9 97 - -
Vifa6g03076 387 MobiDBLite consensus disorder prediction 227 265 - -
Vifa6g03076 387 Coils Coil 188 215 - -
Vifa6g03076 387 CDD Mrs2_Mfm1p-like 26 384 IPR039204 -
Vifa6g03076 387 Gene3D Magnesium transport protein CorA, transmembrane region 104 317 - -
Vifa6g03076 387 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 18 385 IPR039204 -
Vifa6g03076 387 FunFam Magnesium transporter MRS2-1 14 97 - -
Vifa6g03076 387 FunFam Magnesium transporter MRS2-5 122 317 - -
Vifa6g03076 387 Pfam CorA-like Mg2+ transporter protein 272 372 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03076 Vifa-Chr6 1020486272 1020488369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03076 18 360 MRS2 Gene Family AT5G64560 74.571 1.93e-163 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03076 K16075 - gmx:100799368 532.717