Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03053 ATGTTAACAGCTATAGATATATACAATGAAGAACTCATGAAAGCACTAGAGCCTTTTATGAAAACTGGTTCTTCTTCATCAATCTCTGAACAACAATCACATGATTTGAATCCCAATTACGTAACCCAAAGAAGCTCTATTGGTCTCAACCAACTCACCCCATCACAAATCCTTCAAATCCAAAACCAGTTCCAAATCTCCCAACAACAACAAAAAAGCACTCTCACACAAAAGCCCGTTCCCATGAAGCACTTTGGAGCTTCCTCAAAACCCACGAAACTCTATCGTGGAGTTAGACAGCGTCATTGGGGAAAATGGGTTGCTGAAATAAGACTTCCAAAGAACCGCACTCGTCTCTGGTTAGGCACGTTCGATACCGCAGAGGAAGCAGCTTTTGCTTATGACATCGCAGCTTATAAGCTTAGAGGCGAATTCGCACGCCTGAACTTTCCTCATATGCGCTTCCATGGAAACTACAATCCTCTCGCTTCTTCTGTCGATTCCAAACTCCAAGCTATTTGTGAATCCTTAGCTGTTTCTCATGGGGACACTGAAAAACCATGCATCTCTGTTGAAGATGTAAAGCCTGTTGTTTTTGTACCTACACAATCCAAGACTGAGTTGGTTTTTCACGAGTTTGAGGATTTTAAGGTTGAGAATGAGAAGACAGTGTTGTTGTCTATGTCTGATGAATGTTCACCTGGTTTGTCTTCTCCAGAATCCGGTGTAACTTTCTTGGATTTTTCAGATTCTTGTCGGTGGGATGAAGTGGAGAATTCGGGGTTGAAGAAGTACCCTTCTGTTGAAATTGATTGGGAAGCATTATGA 828 0.4191 MLTAIDIYNEELMKALEPFMKTGSSSSISEQQSHDLNPNYVTQRSSIGLNQLTPSQILQIQNQFQISQQQQKSTLTQKPVPMKHFGASSKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAAFAYDIAAYKLRGEFARLNFPHMRFHGNYNPLASSVDSKLQAICESLAVSHGDTEKPCISVEDVKPVVFVPTQSKTELVFHEFEDFKVENEKTVLLSMSDECSPGLSSPESGVTFLDFSDSCRWDEVENSGLKKYPSVEIDWEAL 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03053 275 ProSiteProfiles AP2/ERF domain profile. 94 151 IPR001471 GO:0003700|GO:0006355
Vifa6g03053 275 Gene3D AP2/ERF domain 94 153 IPR036955 GO:0003700|GO:0006355
Vifa6g03053 275 SUPERFAMILY DNA-binding domain 94 152 IPR016177 GO:0003677
Vifa6g03053 275 CDD AP2 93 152 IPR001471 GO:0003700|GO:0006355
Vifa6g03053 275 PRINTS Ethylene responsive element binding protein signature 117 133 IPR001471 GO:0003700|GO:0006355
Vifa6g03053 275 PRINTS Ethylene responsive element binding protein signature 95 106 IPR001471 GO:0003700|GO:0006355
Vifa6g03053 275 SMART rav1_2 94 157 IPR001471 GO:0003700|GO:0006355
Vifa6g03053 275 Pfam AP2 domain 95 144 IPR001471 GO:0003700|GO:0006355
Vifa6g03053 275 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 11 275 - -
Vifa6g03053 275 FunFam Ethylene-responsive transcription factor 2 93 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03053 Vifa-Chr6 1014115578 1014116405 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03053 2 275 AP2-EREBP Transcription Factor Family AT4G39780 52.542 7.35e-85 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa6g03053 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03053 K09286 - gmx:100818839 290.426