Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03050 ATGACTCAACAGAATGTGGTAGTGTCGGAGACGAAAACCGGAATCAACGGTGGTAATAGTAGTATTACCGTGGCGCAGAAGCCACCGGCAGCACCCGGTGGTTACATTCCTATTCCGAGAAGGAGGATTTTGAAGAACCTTGAAATCAATGGAGGTCAGAGAATAAACATTTCCATTGATTCCATGAGAGCTTCTTCTCCAACTCATCTCAAATCAACTCCTTCTTTAGCTGAAGAATACAATTCTTGGATTCTTCATCATCCATCTGCATTAGACATGTTTGAGCAGATTATGGATGCGGCTAAGGGGAAACAGATTGTCATGTTTTTGGACTATGATGGTACTTTATCTCCTATCGTGGACGACCCCGACCGGGCTTTTATGTCGGAATCGATGAGGAAAACTGTTAGGAAACTTGCAAGGTGTTTTCCTACTGCAATTGTCACTGGAAGATGCATTGACAAAGTGTACAATTTTATTCGCTTGGCTGAACTATATTATGCGGGAAGCCATGGTATGGATATTAAAGGCCCAGCAAAAGAGTCTAAATACACCAAAAATGACAAAGCAGAGGAAATTCTTTTTCAACCTGCAAGTGAGTTTGTTCCTATGGTAAATGAGGTGTATGAACAACTAGTTGAGAAAACAAAATCAACTCCTGGGGCTAGAGTTGAGAATCATAAGTTCTGTGCTTCTGTTCATTTTAGATGTGTTGAGGAAAAGAGATGGATTGAATTAGCCCAGCAAGTAAAATCAGTGATAAAAGAGTATCCAAAACTTCGTCTTACACAAGGAAGAATGGTATTCGAGATTCGTCCCTCAATTAAATGGGACAAGGGCAAGGCTTTAGAATTTTTGTTAGAGTCACTTGGATTTGCCAACTGTAACGATGTGTTTCCTGTTTATATTGGAGATGATAGAACCGATGAAGATGCATTCAAGAAATTAAGAGAAAGAGGACAAGGTTTTGGAATTCTGGTCTCTAAATTTCCCAAAGAAACTACTGCTTCTTACTCTCTACAAGAACCCAATGAGGTTATGGATTTTCTGCAGCGTTTGGTGGAGTGGAAAAAATTATCTACAAAATCACGTTCTAGGGTGTAG 1104 0.4004 MTQQNVVVSETKTGINGGNSSITVAQKPPAAPGGYIPIPRRRILKNLEINGGQRINISIDSMRASSPTHLKSTPSLAEEYNSWILHHPSALDMFEQIMDAAKGKQIVMFLDYDGTLSPIVDDPDRAFMSESMRKTVRKLARCFPTAIVTGRCIDKVYNFIRLAELYYAGSHGMDIKGPAKESKYTKNDKAEEILFQPASEFVPMVNEVYEQLVEKTKSTPGARVENHKFCASVHFRCVEEKRWIELAQQVKSVIKEYPKLRLTQGRMVFEIRPSIKWDKGKALEFLLESLGFANCNDVFPVYIGDDRTDEDAFKKLRERGQGFGILVSKFPKETTASYSLQEPNEVMDFLQRLVEWKKLSTKSRSRV 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03050 367 CDD HAD_TPP 107 347 - -
Vifa6g03050 367 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 36 363 IPR044651 GO:0004805|GO:0005992
Vifa6g03050 367 FunFam Trehalose 6-phosphate phosphatase 106 193 - -
Vifa6g03050 367 Gene3D - 196 366 IPR023214 -
Vifa6g03050 367 Gene3D - 106 195 IPR023214 -
Vifa6g03050 367 FunFam Trehalose 6-phosphate phosphatase 198 274 - -
Vifa6g03050 367 FunFam Trehalose 6-phosphate phosphatase 204 363 - -
Vifa6g03050 367 Pfam Trehalose-phosphatase 109 343 IPR003337 GO:0003824|GO:0005992
Vifa6g03050 367 SUPERFAMILY HAD-like 107 356 IPR036412 -
Vifa6g03050 367 NCBIfam trehalose-phosphatase 104 354 IPR003337 GO:0003824|GO:0005992
Vifa6g03050 367 NCBIfam HAD-IIB family hydrolase 108 318 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03050 Vifa-Chr6 1011591362 1011593707 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03050 102 353 Trehalose Biosynthesis Gene Families AT1G70290 27.240 8.22e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03050 K01087 - gmx:100794430 612.838