Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03035 ATGGGTTTAGTGATGACTATCGAAGAGTTTGCAGATGTCGTCCTTGCATATGGGTTTAGTGATGAGTATACCTTTGTTTTCAAGAAAAGCACCAAGTTCTATGAAAGATGGAAGATTCAAATGCGTGTGCTGTTTGGTGCTCAGGATGTTCTGGACCTTGTTTCTGAAGTGGTAGGGGCTGTGGTGAAGTACACAGAAACAGGTGTTCCAATTAAAAGACAAAGGAGAGAGATAATCACAGTGCATTTCAAGAAAATAGCAAGTACACGATTTTGGAATGAGCATTCTATTCTTTTGAAGGAGCTTGGTGTTTTTGTGGAAGAGATTAACAATGTGAAACCGGAGTATGTGAGGTCTTTTGAATTTGATAGCAAGTTGATGCCATCTACATGGGTTGTAGTTCGGATAGATGGATGCCACTTCCACAGATTTTCTGAGATACATGAATTTGTGAAGCCAAATGATGATCGAGCTCTTAACTTGATGAATTTATGTGCGGTGGCTGTCTTAGAAGACTTTAAGCAGGATATAGTCTTTGCTTATGGAGTTAGTGACGAGTACAGTTTCATTCTTAAGAACTCCACTGATCTTTATGAAAGGAGAGCTAGTAAAATCATATCAGCCATTGTATCTTTCTTCACATCCACTTACGTGATGAGATGGAAAGATTTCTTCCCTCAAAGTGAGTTAAGCTACCCTCCTTCTTTCGATGCACGGGCAGTGTGCTATCCATCTGTTGAGATTTTACAGGACTATCTTTCATGGAGGCAAGTGGATTGCCACATAAACAATCAATATAACACTTGTTTCTGGAAGCTTGTTGCATCTGGAAAAAGCAAAAGGGAAGCTCAACGTAATTTAAAGGGCGCTCAACTGCAAAAGAAAATCGAGGAATTGGCTATCGACTATAATAAATTGCCAGTGATGTTCCGTCAAGGATCCTCAGTTTTTTGGGTTAGGGTAGACAATGTTCTCATCCATCAGGAGAATGGAGTGTCTTCTGAAAATTATGGAAAGGTTAAAGCCGAAGAAGTTGTTCAGTCAATACCCTTGCCAGCAAAAAGGAAGGAAAGATCTCTTATATCATTGGTGGTTAGTGCTCCCAAAGTTTCAACGCGTACAAGGTTTACAGGAAAGAGAACAAAAACTGGTACAAGAAAGGCTGCTTCTTTATGTGGATGCAGTTTTATCCCGGAAGGTTCAATAAAGAGAGAAGATACACATGACGAAGATATTCTGGGTTCTTTCATAGGTGTGACTTCTAAGAAGCATAGACCTAATGAAGATACAAACAACAATATGGACCTTACCGAAGGATAG 1320 0.397 MGLVMTIEEFADVVLAYGFSDEYTFVFKKSTKFYERWKIQMRVLFGAQDVLDLVSEVVGAVVKYTETGVPIKRQRREIITVHFKKIASTRFWNEHSILLKELGVFVEEINNVKPEYVRSFEFDSKLMPSTWVVVRIDGCHFHRFSEIHEFVKPNDDRALNLMNLCAVAVLEDFKQDIVFAYGVSDEYSFILKNSTDLYERRASKIISAIVSFFTSTYVMRWKDFFPQSELSYPPSFDARAVCYPSVEILQDYLSWRQVDCHINNQYNTCFWKLVASGKSKREAQRNLKGAQLQKKIEELAIDYNKLPVMFRQGSSVFWVRVDNVLIHQENGVSSENYGKVKAEEVVQSIPLPAKRKERSLISLVVSAPKVSTRTRFTGKRTKTGTRKAASLCGCSFIPEGSIKREDTHDEDILGSFIGVTSKKHRPNEDTNNNMDLTEG 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03035 439 Coils Coil 280 300 - -
Vifa6g03035 439 PANTHER UNCHARACTERIZED 111 343 IPR007537 GO:0000287|GO:0006400|GO:0008193
Vifa6g03035 439 Gene3D - 3 61 IPR038469 -
Vifa6g03035 439 Pfam Thg1 C terminal domain 248 336 IPR025845 -
Vifa6g03035 439 FunFam tRNA(His) guanylyltransferase 1 109 366 - -
Vifa6g03035 439 Pfam tRNAHis guanylyltransferase 115 244 IPR024956 GO:0000287|GO:0006400|GO:0008193
Vifa6g03035 439 Gene3D - 109 369 IPR038469 -
Vifa6g03035 439 MobiDBLite consensus disorder prediction 420 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03035 Vifa-Chr6 1007626946 1007633805 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03035 313 411 C3H Transcription Factor Family AT2G30580 43.434 1.14e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03035 K10761 - gmx:100802539 500.36