Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03031 ATGGCTCACAACAATCGCTACCTTCAACCTAATCAATTCGATATTGAGCAAATTTTGTCAGAAGCGCAGTATAGATGGTTGCGTCCAGCTGAAATTTGTCAAATTCTTACTAATTATAATCACTTTCAGATTACTTCACAGCCTGCAAATATGCCTCCAAGTGGTTCACTTTTCCTATTTGATCGGAAGGTGATGAGATACTTTAGAAAAGATGGACATAACTGGAGGAAGAAAAAAGATGGAAAAACTGTTAGGGAAGCTCATGAGAGACTCAAGGCTGGAAGTGTGGAGGTATTGCACTGCTACTATGCTCATGGAGAACAAAATCAAAATTTTCAAAGACGGACTTACTGGATGCTTGAGGATGATCTCTCGCACATTGTTCTAGTCCATTATCGGGAAGTCAAGGGAACCAAGGCAACTTCAACATGTGACAAAGAAAATGAAGAATCTCATCCTTATGCTCAACAGACATACAATGCTATGCCCAACACAGAGATGGAGACTTCATTACCGTCTAGCACTAACAGTGCTCAACCATCAGAATATGAAGAAGCTGAATCAGCATTCAATAGCCATGCAAATTCCGATTTCTACTCTTTTCTTGAGATGCAACACCCTGTTGTTCAGAAGATTAAATCTCAACAACCCGCTGATTTTTACTGTCCTCTACCACTCAAAGATGATCAACAAAGGTTGCCTGTTATTAATAATGTTGGGTTGACACGTGATCCCTCAAAACTCCTTGGCTTTTCATCATGGCAAGATATCTTAGAAAATAATGCTGGAAGTCAAAATTTGCCTTTTCAGCCTTTTTTTCCTGAAACACAATTCAATGACATGGGAATAAATAGTACTTCTCAAGGATATGAAGTAATGGGGCAACATCTAAGCATTGGAATTACTAAACACCATGAGAATGGAAGTCTTATACAAGATAAAGGAAATTGGCAGGATTCTGGTTTTAATTCTTTAAGCACATCCAGTTGGCCCAAAGATAATGTGTGTTCAGGCTCAACGTGTGAGGTTAGTTATAGTAACAATGATCAGGAAGTTAATAAAGTTGATTTTCGACAATCCTTGGAACAGTTCCTTCTTCATCCATACCAACAACACAAAGTCATGCAAAATAGCCCTCACGAAATACTTTTACAAGCAGAATCCATGTTAAAATCGGATCTAGAGGTCAATAGAAGCGTAGATGGAATACAAGACATTTGTTTCGCTTCAAAGAAGAGTCCATTACTTGTATCTGTGGCAGAAGAGGGCCTGAAGAAGCTTGACAGTTTCAACCGATGGATGAGTAAAGAACTAGGAGATGTCGAAGAATCGAGCAAGCAATCCACTTCTAGTGCTTATTGGGATACAATCGAAAGCGAAAATGGAATTGACAGTATAACTATTCCTTCCCATGTGTACCTAGACAACTATGTCCTGGATCCATCTATTTGCCACGATCAGCTTTTCACAATCATTGATTATTCCCCAAGTTGGACATTTGAAGACTCAGAAATTAAGGTTCTCATTTCGGGACGATTCTTAAGGAGTCAGCATGAAGCAGAAAATTGTAAATGGTCATGCATGTTTGGCGAGGTAGAGGTGTCAGCGGAGATAATCCGGAATGGTGTTCTCTGCTGTCATACTCCGCCACACAAGGCTGGCAGGGTTCCTTTCTATGTTACATGTTCTAATAGGTTAGCATGTAGTGAAGTGCGTGAGTTTGACTTTCGAGTCAATTGTACCCAAGAAGACAACACTACAGATGAGAACAGAAGCAGCAACGCTCTTGATACTTTTAATAAACGGTTTGGAGAACTGTTGTTGCAGGATCATGAGTTCCCTCAGAGTTTAGATTCAATTAGTGTGAATGAGAAATCTCAACTGAGAAGTAAAATCAGTTCATTGTTTAGGAGGGAGGATGATGAATGGGAAAAAATACTGAAATATACTCTAGAGAAAGATTTTTCTCCCGACCTTGTACAGGAGAAGCTGCTTCAAAATCTTCTAAAAGATAAGCTATATTCATGGCTCCTTCAGAAAACAACTGAAGATGGAAAAGGCCCAAATGTATTAGATGAAGGTGGTCAAGGTGTGCTTCATTTTGCAGCTGCTCTTGGCTATGATTGGGCCTTGGAACCAACAATAGTTGCTGGTGTGAATGTGAACTTTCGCGATGTTAATGGATGGACTGCTCTTCATTGGGCAGCTTTTTGTGGCAGGGAGAGGATAGTTGCTTCCCTCATATCTCTTGGGGCAGCACCGGGAGCACTTACCGACCCATGTCCACAACATCCTTCTGGTAGAACACCAGCTGACCTAGCTTCTGCAAATGGACACAAAGGAATTGCTGGTTATCTTGCAGAATCTTTCCTGAGCGCACAACTCAAGTCTATTGATTTGAAAAGAGAGGCAGGAGAAAGTTTTGGAACAAAAGTAGTTCAAAGAGTCCATGAACAAAACACTTTTCAACTTAACAATGAGAGAATATCACATGAACTGTCAATGAAAGATTCATTGGCTGCAGTGTGCAATGCAACTCAAGCTGCTGCTCGTATTCATCAAGTTTTCAGAGTGCAATCGTTTCAGAGAAAACAGCAAAAGGAACATGGTGTCAACAAATTTGGAATATCTGATGAACGTGCTCTTTCACTGATAGCAGCGAATGCCAAGTTGCACAAGTTTGGACAACGCGATGAGCCTGTTCATGTTGCTGCAACACGAATTCAAAACAAGTTCCGCAGTTGGAAAGGCAGAAAAGATTTTTTGATTATTCGACAGCGAATTGTAAAGATTCAGGCTCACGTGAGAGGTCACCAGGTTAGGAAAAACTATGGGAAGATAATTTGGTCAGTTGGGATCGTGGAAAAGATTATATTGCGTTGGCGTCGAAAAGGTAGTGGTTTGCGTGGATTCAAATCAGAGGCCATCTCCGAGGGAGCTATGGTACAAGGTGTATCATCTTCCACTGAAGATGACTACGATTTTTTGAAAGAAGGCAGAAAGCAAACTGAGAAAAGGTTGGAGAAAGCACTTGCTAGGGTGAAGTCGATGGCTCAGTATCCAGATGCAAGAGACCAATACCACAGACTATTGAATGTTGTAACTGATATACAAGAAAACCAGGTAAAGCAAGATTCGAATTTTAGTAATTCAGAAGAAACAAGACAAAGACAATTCAATAACCTCGTTGATCTTGAAGCATTGTTGGATGAAGATACTTTCATGTCTACAGACACTTAG 3240 0.4037 MAHNNRYLQPNQFDIEQILSEAQYRWLRPAEICQILTNYNHFQITSQPANMPPSGSLFLFDRKVMRYFRKDGHNWRKKKDGKTVREAHERLKAGSVEVLHCYYAHGEQNQNFQRRTYWMLEDDLSHIVLVHYREVKGTKATSTCDKENEESHPYAQQTYNAMPNTEMETSLPSSTNSAQPSEYEEAESAFNSHANSDFYSFLEMQHPVVQKIKSQQPADFYCPLPLKDDQQRLPVINNVGLTRDPSKLLGFSSWQDILENNAGSQNLPFQPFFPETQFNDMGINSTSQGYEVMGQHLSIGITKHHENGSLIQDKGNWQDSGFNSLSTSSWPKDNVCSGSTCEVSYSNNDQEVNKVDFRQSLEQFLLHPYQQHKVMQNSPHEILLQAESMLKSDLEVNRSVDGIQDICFASKKSPLLVSVAEEGLKKLDSFNRWMSKELGDVEESSKQSTSSAYWDTIESENGIDSITIPSHVYLDNYVLDPSICHDQLFTIIDYSPSWTFEDSEIKVLISGRFLRSQHEAENCKWSCMFGEVEVSAEIIRNGVLCCHTPPHKAGRVPFYVTCSNRLACSEVREFDFRVNCTQEDNTTDENRSSNALDTFNKRFGELLLQDHEFPQSLDSISVNEKSQLRSKISSLFRREDDEWEKILKYTLEKDFSPDLVQEKLLQNLLKDKLYSWLLQKTTEDGKGPNVLDEGGQGVLHFAAALGYDWALEPTIVAGVNVNFRDVNGWTALHWAAFCGRERIVASLISLGAAPGALTDPCPQHPSGRTPADLASANGHKGIAGYLAESFLSAQLKSIDLKREAGESFGTKVVQRVHEQNTFQLNNERISHELSMKDSLAAVCNATQAAARIHQVFRVQSFQRKQQKEHGVNKFGISDERALSLIAANAKLHKFGQRDEPVHVAATRIQNKFRSWKGRKDFLIIRQRIVKIQAHVRGHQVRKNYGKIIWSVGIVEKIILRWRRKGSGLRGFKSEAISEGAMVQGVSSSTEDDYDFLKEGRKQTEKRLEKALARVKSMAQYPDARDQYHRLLNVVTDIQENQVKQDSNFSNSEETRQRQFNNLVDLEALLDEDTFMSTDT 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03031 1079 SMART iq_5 923 945 IPR000048 GO:0005515
Vifa6g03031 1079 SMART iq_5 900 922 IPR000048 GO:0005515
Vifa6g03031 1079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 893 951 IPR027417 -
Vifa6g03031 1079 SUPERFAMILY Ankyrin repeat 683 789 IPR036770 -
Vifa6g03031 1079 SMART CG_1_2 18 136 IPR005559 GO:0003677
Vifa6g03031 1079 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 13 1040 - -
Vifa6g03031 1079 Pfam IQ calmodulin-binding motif 926 944 IPR000048 GO:0005515
Vifa6g03031 1079 ProSiteProfiles Ankyrin repeat profile. 727 759 IPR002110 GO:0005515
Vifa6g03031 1079 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Vifa6g03031 1079 MobiDBLite consensus disorder prediction 165 186 - -
Vifa6g03031 1079 Gene3D Immunoglobulins 484 581 IPR013783 -
Vifa6g03031 1079 ProSiteProfiles IQ motif profile. 924 948 IPR000048 GO:0005515
Vifa6g03031 1079 SMART ANK_2a 766 795 IPR002110 GO:0005515
Vifa6g03031 1079 SMART ANK_2a 727 756 IPR002110 GO:0005515
Vifa6g03031 1079 Pfam IPT/TIG domain 490 565 IPR002909 -
Vifa6g03031 1079 Gene3D - 660 800 IPR036770 -
Vifa6g03031 1079 ProSiteProfiles Ankyrin repeat region circular profile. 727 752 - -
Vifa6g03031 1079 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Vifa6g03031 1079 ProSiteProfiles IQ motif profile. 902 930 IPR000048 GO:0005515
Vifa6g03031 1079 FunFam Calmodulin-binding transcription activator 2 484 581 - -
Vifa6g03031 1079 Coils Coil 993 1013 - -
Vifa6g03031 1079 SUPERFAMILY E set domains 490 576 IPR014756 -
Vifa6g03031 1079 FunFam Calmodulin-binding transcription activator 2 900 948 - -
Vifa6g03031 1079 Gene3D - 900 947 - -
Vifa6g03031 1079 Pfam Ankyrin repeats (3 copies) 699 789 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03031 Vifa-Chr6 1006383034 1006389817 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03031 1 1053 CAMTA Transcription Factor Family AT5G64220 47.227 0.0 888
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vifa6g03031 Ank_2 1.2e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03031 K21596 - gmx:100798875 1561.2