Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03027 ATGGAAGATCACACACAATTAACTAATGTTCCTCTTCAAAACCTCTCACAATTAAGCACCAAAATGGATTCTCTTCAACGCTTCATATCCCAATCCATCAAAGCCAAAACTCTCCTCCCTAAACAACACTTAGACACACTCTCCAACCAAATCTCATCGACCATTTGCGACGTCATAATCAATGCAACTGCTCTTCTCGCCACGTGTCCCGTAACACTACCGGTAGATTGTTACGCGACACCTGACAAGAATCATGACCATGACGTAGCAAATTATGAACATTCCAACATCGTGGAACTCGACGCTGTGGAGTTACTCGCGAAGCATTATCACTTCTGCGAGATATGCGGGAAAGGATTCACGCGCGACGCGAATCTGCGTATGCACATGCGTGCTCACGGGGAACAGTTCAAGACTGCAGAAGCGTTGCGTTGCGTGAGGGAAACGCGCTTAACCGCGACAACAGCGACGAGATTTTCCTGTCCTTTCGAAGGATGCAAAAGGAACAAGCTACACAAGAGGTTCACGCCGTTGAAGTCGGTGTTCTGTTTGAGGAACCATTTTAAGAGAAGTCATTGTCCGAAAACTCACACGTGTGATCGGTGTCGGAGGAAGAGCTTTGCGGTGGTTTCGGATTTGAAGAGTCATGTGAAGCAGTGTAAGGGAGAGTCGACTTGGAAGTGTTCGTGCGGAACTACGTTTTCTAGGAAGGAGAAACTGTTTGGACACGTGGCACGGTTTGAGGGGCATTCACCGGTGTTTGATGAGGCGGCGGGAGAAGAAGGGAGTGGACAATCCGTGGCGGCGGAAGGGGAAGGTGTGAACGTGAGTGCAATTTTGACTAAGGAAAACGATGGGTTACCTGAAGGTTTCTTTGATGATTTGGATAAGTTTTGGGTTTGA 903 0.4784 MEDHTQLTNVPLQNLSQLSTKMDSLQRFISQSIKAKTLLPKQHLDTLSNQISSTICDVIINATALLATCPVTLPVDCYATPDKNHDHDVANYEHSNIVELDAVELLAKHYHFCEICGKGFTRDANLRMHMRAHGEQFKTAEALRCVRETRLTATTATRFSCPFEGCKRNKLHKRFTPLKSVFCLRNHFKRSHCPKTHTCDRCRRKSFAVVSDLKSHVKQCKGESTWKCSCGTTFSRKEKLFGHVARFEGHSPVFDEAAGEEGSGQSVAAEGEGVNVSAILTKENDGLPEGFFDDLDKFWV 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03027 300 Pfam Zinc-finger of C2H2 type 112 131 - -
Vifa6g03027 300 Gene3D Classic Zinc Finger 108 140 - -
Vifa6g03027 300 SMART c2h2final6 111 133 IPR013087 -
Vifa6g03027 300 SMART c2h2final6 197 218 IPR013087 -
Vifa6g03027 300 SMART c2h2final6 159 192 IPR013087 -
Vifa6g03027 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
Vifa6g03027 300 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 83 265 IPR044300 GO:0010044|GO:0010447
Vifa6g03027 300 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Vifa6g03027 300 FunFam B-cell CLL/lymphoma 6, member B 108 133 - -
Vifa6g03027 300 SUPERFAMILY beta-beta-alpha zinc fingers 109 133 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03027 Vifa-Chr6 1005286316 1005287218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03027 97 286 C2H2 Transcription Factor Family AT1G34370 51.031 1.50e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa6g03027 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03027 - - cam:101510069 394.045