Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03026 ATGGACTTGTTATTTGTATTATTGCTGTTGGGTTGCTTCTGTTCTTTTGTGTTGTCTGATCAGCAAGGAGATGCACTGATTGCGTTGAAGCTATCACTGAATGCTTCAAGTCAACAGCTTACTGACTGGAATGAAAATCAAGTCAACCCATGTACTTGGTCAAATATTAACTGTAATCAAAACAACAATGTTCTTGGAGTTTCGTTGGGGATAATGGGATTCACAGGATACTTGACCCCTAGGATAGAAGCTCTAAAATATCTCCAATTTATTTCTTTGCAAGGAAATGACATCACTGGTGACATACCAAAAGAATTCGGAAACCTGGCTAGCTTGGTCAGGTTGGATTTGGAAAACAACAGATTAACCGGTGAAATACCGTCTTCCCTTGGTAATCTCAAAAAGCTCCAATTCTTGACATTGAGTCAAAACAATCTCAGTGGGACTATTCCTGAATCAATTGCCAGTATTTCAAGCTTGATCGAAGTTCAGCTAGATTCAAATAATCTTAGTGGCCGAATTCCTCCGCAGTTATTTGAAGTTTCTAATTACAATTTCAGCGGAAATAATTTGAATTGTGGCATGAGTTATGGCCAACCTTGTGCTAACAATAATTCAGATCAAGGTTCATCACATAAACCAACCGGCCTCATAATCGGATTTAGCATAGCATTTGTAGCTATCCTTGTTATTGGTGGCCTCCTATTTTTTTGGTGCAAGGGTAGACACAAGGGCTACAAACGTGAAGTTTTTGTAGATGTTGCAGGTGAAGTTGATCGGCGAATTGCATTTGGTCAATTAAGAAGATTTGCATGGAGAGAACTACAAATAGCTACCGACAACTTCAGTGAGAAAAATGTTTTAGGACAGGGAGGCTTTGGAAAGGTTTATAAAGGCGTCCTTTCTGATAACACCAAAGTTGCTGTTAAAAGGCTAACTGATTATGAAAGCCCTGGGGGAGATGTAGCTTTCCAGCGTGAAGTTGAGATGATAAGTGTAGCAGTTCATCGGAACTTGTTACGGCTGATTGGGTATTGTACTACTCCAACTGAGCGCCTTTTAGTTTATCCCTTCATGCAGAACTTAAGTCTTGCATATCGTCTACGAGAACTCAAACCGGGGGAACTTGTTTTGGGTTGGCCTACAAGAAAACAAGTAGCTCTGGGAACTGCACGGGGCCTAGAATATCTTCACGAGCATTGCAATCCTAAGATTATTCACCGGGATGTGAAGGCAGCCAATGTATTACTAGACGAAGATTTTGAAGCAGTTGTCGGCGACTTTGGTTTGGCAAAGTTAGTAGATGTTCGAAAGACTAACGTGACAACTCAAGTTCGTGGAACAATGGGCCACATAGCTCCTGAATATTTGTCGACCGGAAAGTCCTCAGAAAGGACTGATGTTTTTGGCTATGGGATTATGCTTCTGGAGCTTGTTACAGGCCAACGCGCAATTGACTTCTCACGGTTGGAAGAGGAAGATGATGTGTTGTTACTTGACCATGTTAAGAAATTAGAGCGGGAGAAAAGACTAGAAGTTATTGTTGATCGCAACCTAAACAAAAATTACAACATACAAGAGGTAGAAATGATGATAAAAGTTGCATTACTGTGCACTCAAGCAACGCCAGAAGACCGTCCACTAATGTCGGAGGTTGTAAGAATGCTAGAAGGAGAAGGATTGGCTGAAAGGTGGGAAGAATGGCAACACGTGGAGGTGAACCGGAGACAAGAATACGAGAGATTACAAAGAAGATTTGATTGGGGAGAAGATTCAGTTTATAATCAAGATGCCATTGAGTTGTCTGGTGGGAGATGA 1818 0.412 MDLLFVLLLLGCFCSFVLSDQQGDALIALKLSLNASSQQLTDWNENQVNPCTWSNINCNQNNNVLGVSLGIMGFTGYLTPRIEALKYLQFISLQGNDITGDIPKEFGNLASLVRLDLENNRLTGEIPSSLGNLKKLQFLTLSQNNLSGTIPESIASISSLIEVQLDSNNLSGRIPPQLFEVSNYNFSGNNLNCGMSYGQPCANNNSDQGSSHKPTGLIIGFSIAFVAILVIGGLLFFWCKGRHKGYKREVFVDVAGEVDRRIAFGQLRRFAWRELQIATDNFSEKNVLGQGGFGKVYKGVLSDNTKVAVKRLTDYESPGGDVAFQREVEMISVAVHRNLLRLIGYCTTPTERLLVYPFMQNLSLAYRLRELKPGELVLGWPTRKQVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLEVIVDRNLNKNYNIQEVEMMIKVALLCTQATPEDRPLMSEVVRMLEGEGLAERWEEWQHVEVNRRQEYERLQRRFDWGEDSVYNQDAIELSGGR 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03026 605 SUPERFAMILY Protein kinase-like (PK-like) 262 557 IPR011009 -
Vifa6g03026 605 Pfam Protein kinase domain 283 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03026 605 FunFam Somatic embryogenesis receptor kinase 1 251 358 - -
Vifa6g03026 605 Gene3D Transferase(Phosphotransferase) domain 1 359 576 - -
Vifa6g03026 605 SUPERFAMILY L domain-like 21 193 - -
Vifa6g03026 605 Gene3D Phosphorylase Kinase; domain 1 251 358 - -
Vifa6g03026 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 405 417 IPR008271 GO:0004672|GO:0006468
Vifa6g03026 605 ProSiteProfiles Protein kinase domain profile. 282 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03026 605 FunFam Somatic embryogenesis receptor-like kinase 1 359 576 - -
Vifa6g03026 605 Pfam Leucine Rich Repeat 111 133 IPR001611 GO:0005515
Vifa6g03026 605 ProSitePatterns Protein kinases ATP-binding region signature. 288 310 IPR017441 GO:0005524
Vifa6g03026 605 FunFam Putative LRR receptor-like serine/threonine-protein kinase 19 203 - -
Vifa6g03026 605 Gene3D Ribonuclease Inhibitor 19 202 IPR032675 -
Vifa6g03026 605 SMART serkin_6 282 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03026 605 Pfam Leucine rich repeat N-terminal domain 20 59 IPR013210 -
Vifa6g03026 605 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 4 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03026 Vifa-Chr6 1005155520 1005158451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03026 1 605 Receptor kinase-like Gene Family AT5G10290 74.711 0.0 917
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vifa6g03026 Pkinase 4.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03026 - - gmx:100793416 1052.35