Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03021 ATGGAAAAATATGAGATAATTAAAGATATTGGATCAGGAAACTTTGGTGTTGCAAAGCTTGTAAGAGAAAAATGGAGTGGCGAATTCTATGCTGTTAAGTTCATTGAAAGAGGCTTCAAGATTGATGAACACGTGCAAAGGGAGATTATAAATCACAGGTCCTTGAAACATCCCAATATTGTTAGGTTCAAAGAGGTGTTGCTTACTCAAACTCATTTAGCAATTGTGATGGAATATGCTGCTGGTGGAGAACTGTTTGAAAGAATATGTAGTGCTGGTAGATTCGGTGAGGACGAGGCAAGATATTTCTTCCAGCAATTGATTTCTGGAGTTAGCTATTGCCATTCAATGGAAATTTGCCATAGAGATCTTAAGCTAGAAAACACACTTCTAGATGGAAGCTCGGCACCACGCCTCAAAATATGTGACTTTGGTTACTCAAAGTCATCTGTTCTGCACTCCCAACCAAAATCAACGGTCGGAACCCCGGCTTATATTGCACCAGAGGTCTTATCAAGAAGAGAATATGATGGAAAGATTGCAGATGTTTGGTCTTGTGGGGTGACTTTGTATGTGATGCTTGTTGGTGCTTATCCTTTTGAAGATCCAGAAGACCCAAAAAACTTCAGAAAAACACTTCAGCGAATTCTTAGTGTACACTATTCTATTCCAGACTATGTCCGCGTCAGTCAAGAGTGCAGACATCTTTTATCAAGAATATTTGTAGCCAATCCAGAGAAGAGAATTACCATACCAGAGATTAAAATGCACCCATGGTTCCTAAAAAACTTGCCACTAGAATTCACAGAGGGTGAAAATAATAATTTACAAACTAATGAAAACGATTCATCATCACAAAGCATAGAAGAAACATTGTCCATAATTCAAGAAGCTAGAAAAGCAGGTGATGGTCCAAAAGTGAGTGAGCAGTTTGTTGGTGGCAGTATGGATCTTGATGATATAGATGCAGATGTTGACATAGATGACATTGAAACTAGTGGTGATTTTGTTTGTGCTTTATGA 1023 0.3842 MEKYEIIKDIGSGNFGVAKLVREKWSGEFYAVKFIERGFKIDEHVQREIINHRSLKHPNIVRFKEVLLTQTHLAIVMEYAAGGELFERICSAGRFGEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGSSAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLSRREYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPKNFRKTLQRILSVHYSIPDYVRVSQECRHLLSRIFVANPEKRITIPEIKMHPWFLKNLPLEFTEGENNNLQTNENDSSSQSIEETLSIIQEARKAGDGPKVSEQFVGGSMDLDDIDADVDIDDIETSGDFVCAL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03021 340 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03021 340 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03021 340 SUPERFAMILY Protein kinase-like (PK-like) 2 268 IPR011009 -
Vifa6g03021 340 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03021 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Vifa6g03021 340 PANTHER SERINE/THREONINE KINASE 2 283 - -
Vifa6g03021 340 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Vifa6g03021 340 CDD STKc_SnRK2 3 259 - -
Vifa6g03021 340 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vifa6g03021 340 Gene3D Transferase(Phosphotransferase) domain 1 80 267 - -
Vifa6g03021 340 FunFam Serine/threonine-protein kinase SRK2E 80 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03021 Vifa-Chr6 1003462648 1003464645 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03021 3 276 CBL-interacting serine-threonine protein kinases AT4G24400 43.463 7.76e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vifa6g03021 Pkinase 6.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03021 K14498 - gmx:100807981 613.609