Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03016 ATGATTCAACTTAACAACTGGAGGAGACAGCTTGTGGTTCTTTTGGAAGAACCTTCTGTTGATTATGCATGCACACCAGAGGAAGTGCAGCAACACTTTCAGTCATGTGGTACAGTGAACAGGGTCACTATCCTGACAGACAAGTTTGGTCAGCCTAAAGGTTTTGCTTATGTGGAATTTGTTGAAGCCGAAGCTGTTCAAGAAGCTATCCTGTTGACCGAAACTGAATTGCATGGCCGACAATTGAAAGTTCTGCCTAAGAGGACCAATGTTCCTGGAATGAAACAATACCGTCCTAGGCGATTGAATCCTTACATGGCGTACGGCTTCAGGAGGCCTTATGCTCCTCCTCCTTACATGTATTCCCCTTACGGATATGGGAAGGCTCCAAGGTATAGAAGGCCAAATCGTTACATGCCATACTATTAG 429 0.4499 MIQLNNWRRQLVVLLEEPSVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAVQEAILLTETELHGRQLKVLPKRTNVPGMKQYRPRRLNPYMAYGFRRPYAPPPYMYSPYGYGKAPRYRRPNRYMPYY 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03016 142 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 83 IPR000504 GO:0003723
Vifa6g03016 142 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 20 108 - -
Vifa6g03016 142 SUPERFAMILY RNA-binding domain, RBD 20 106 IPR035979 GO:0003676
Vifa6g03016 142 CDD RRM_II_PABPs 20 85 - -
Vifa6g03016 142 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 89 IPR000504 GO:0003723
Vifa6g03016 142 SMART rrm1_1 12 85 IPR000504 GO:0003723
Vifa6g03016 142 Gene3D - 18 93 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03016 Vifa-Chr6 1001765664 1001767438 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03016 19 102 Eukaryotic Initiation Factors Gene Family AT2G36660 33.333 3.15e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03016 K14396 - gmx:100789721 187.578