Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03014 ATGGAAGCTTTCGGCGGTTACTTGGTCGATGAGAAAGCCGTTAGGGTTGAGAACGCTTTCTTAGATTTTCTCAAAAGTTTCAGATCTGGACAGCGGAATGAACTGTATTACGAAGCGGAGATTGAGGTGATGAGAGCTAACGAGTCCAACACCATGTTTATCGATTTCGAGCATGTCATCAGATTCAGTGATCTTCTTCAGAAAGCTATCTCTGATGAATATTTGAGGTTTGAAGCTTACTTGCAGAATGCTTGCAAGAGGTTCGTAATGGAGCTCAAGCCGACCTTTATTTCTGACGATAACCCTAACAAGGACATCAATGTTGCCTTCTATAACATTCCAATTGTCAAGAGGTTAAGAGAGTTGGCTACTTCAGAGATTGGAAGGCTTGTATCTGTAACAGGAGTTGTAACAAGGACAAGTGAGGTTCGACCTGAGCTTCTCCAAGGAACTTTCAAGTGTCTAGAATGTGGCGGGGTTATAAAGAATGTTGAACAGCAATTCAAGTATACTGAGCCAACAATCTGTCCGAATGCCACCTGTAACAATAGAACAAGGTGGGCTCTGCTGCGCCAAGAGAGCAAATTTACTGATTGGCAAAGGGTAAGAATGCAGGAGACCTCCAAAGAGATACCTGCGGGTTCTTTGCCTAGGTCATTGGATGTTATTCTCCGTCATGAGATTGTGGAACATGCTAGGGCTGGTGACACAGTGATTTTTACTGGCACTGTAATTGTCATACCTGATATATTGGCATTGGCATCCCCTGGAGAGAGATCAGAATGTCGTAGGGAAGCTTCTCAACGCAAGGGCTCTTCATCTGGAAATGAAGGTGTGAGGGGCCTTAGAGCTTTGGGAGTCAGAGACCTCTCTTATCGTCTAGCTTTTATTGCCAACTCTGTTCAGATTTGTGATGGTAGAAAAGAAATAGACATCAGGAATAGGAAGAAGGATTCAGAGGAAGATGATCAGCCATTTTCTCAACAGGAACTGGATGAAGTTCAACGAATGCGGAACACCCCAGATTTCTTCACAAAACTTGTTGAGAGTGTTGCTCCTACTATTTTTGGTCATCAAGATATAAAGCGGGCAATCCTTCTTATGCTTATGAGTGGGGTCCATAAATCTACTCATGAAGGCATCAGCCTTAGAGGAGACATAAATGTTTGCATTGTTGGAGATCCTAGCTGTGCAAAGTCTCAATTTCTAAAGTATACTTCAAGCATTGTTCCAAGATCTGTGTACACATCTGGTAAATCATCATCTGCTGCTGGTTTGACTGCAACTGTTGCCAAGGAACCAGAAACTGGGGAGTTTTGTATTGAGGCTGGTGCTTTGATGCTTGCTGACAATGGTATTTGCTGCATTGATGAATTTGACAAGATGGACATAAGAGATCAGGTTGCAATTCATGAGGCTATGGAACAACAAACTATTAGTATCACGAAAGCAGGAATACAAGCAACCCTCAATGCTCGGACTTCCATTCTTGCTGCTGCCAACCCTGCTGGAGGACGGTATGATAAGTCTAAGCCATTGAAGTACAATGTGGCTCTTCCACCGGCTATACTTTCAAGGTTTGATCTTGTATACATTATGATTGATGACCCAGACGATAATACAGATTACCACATAGCTTCTCACATTGTGCGGGTTCATCAAAAGCGTGAAGATGCTCTTTCTCCAACATTCACTACAGCAGAACTAAAACGCTATATAGCCTATGCAAAAACTCTTAAACCTAAGCTAACGTCAGATGCAAGAAAACTACTGGTAGATTCTTATGTTGCTCTCCGTAGGGCTGATACAAATCCTGGCAGTAGGGTTGCATATCGTATGACTGTTAGGCAGTTGGAGGCTTTAATCAGGCTGTCAGAGGCCATTGCACGGTGTCATTTGGATAATCAGGTGCAACCTCGCCATGTTCGCGTAGCAGTAAAACTGCTGCAAACATCTATAATAAGAGTGGAGTCCAGTGAGATTGATCTATCTGAGTTTCAAGATCAAGATAGGGAGGAAGAAGCAGGCAGTGGTGATGGAAATAATAATAATGATGATGGAACTAACGGTGATAATGAAAATCCAGCGGATGGATCTAACCCACAAAGAAAGAAATCAACTGTAACTGATGAATACTTTCAGAGGATTACCAAGGCCCTTGTCATCCGGCTTAGACAACATGAGGAGACTGTAGTGCAACAAGGAAGTGACTTGGCTGGGATGAGGCAACGAGATTTGATTAAATGGTATGTAGACCAGCAAAATGAGAAAAATAACTATAGTTCCATAGAGGAGGCGAAAACTGAAGTTTCCCAAATTAAAGCAATTATAGAGATTTTAATTCGAAGAGAGGGGCATTTGATAGTGGTAGATGATGGGAGACAAGCTGCAGCGGAAGCTGGTGGTGCAGAACAAACCGAGTCTGCAGCTAGAAATGATCGAATTTTGGCTGTAGCTCCTAACTATGTCATTGACTGA 2478 0.427 MEAFGGYLVDEKAVRVENAFLDFLKSFRSGQRNELYYEAEIEVMRANESNTMFIDFEHVIRFSDLLQKAISDEYLRFEAYLQNACKRFVMELKPTFISDDNPNKDINVAFYNIPIVKRLRELATSEIGRLVSVTGVVTRTSEVRPELLQGTFKCLECGGVIKNVEQQFKYTEPTICPNATCNNRTRWALLRQESKFTDWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEHARAGDTVIFTGTVIVIPDILALASPGERSECRREASQRKGSSSGNEGVRGLRALGVRDLSYRLAFIANSVQICDGRKEIDIRNRKKDSEEDDQPFSQQELDEVQRMRNTPDFFTKLVESVAPTIFGHQDIKRAILLMLMSGVHKSTHEGISLRGDINVCIVGDPSCAKSQFLKYTSSIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRFDLVYIMIDDPDDNTDYHIASHIVRVHQKREDALSPTFTTAELKRYIAYAKTLKPKLTSDARKLLVDSYVALRRADTNPGSRVAYRMTVRQLEALIRLSEAIARCHLDNQVQPRHVRVAVKLLQTSIIRVESSEIDLSEFQDQDREEEAGSGDGNNNNDDGTNGDNENPADGSNPQRKKSTVTDEYFQRITKALVIRLRQHEETVVQQGSDLAGMRQRDLIKWYVDQQNEKNNYSSIEEAKTEVSQIKAIIEILIRREGHLIVVDDGRQAAAEAGGAEQTESAARNDRILAVAPNYVID 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03014 825 FunFam DNA helicase 146 197 - -
Vifa6g03014 825 ProSiteProfiles MCM family domain profile. 343 549 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa6g03014 825 Pfam MCM N-terminal domain 18 112 IPR027925 -
Vifa6g03014 825 Pfam MCM6 C-terminal winged-helix domain 704 824 IPR041024 -
Vifa6g03014 825 CDD MCM6 346 652 - -
Vifa6g03014 825 Pfam MCM P-loop domain 331 553 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa6g03014 825 SMART mcm 115 654 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vifa6g03014 825 Gene3D - 328 658 IPR027417 -
Vifa6g03014 825 MobiDBLite consensus disorder prediction 680 707 - -
Vifa6g03014 825 SUPERFAMILY Nucleic acid-binding proteins 20 249 IPR012340 -
Vifa6g03014 825 Gene3D - 701 825 - -
Vifa6g03014 825 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 166 183 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Vifa6g03014 825 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 219 230 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Vifa6g03014 825 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 116 128 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Vifa6g03014 825 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 278 299 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Vifa6g03014 825 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 11 762 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vifa6g03014 825 PRINTS Mini-chromosome maintenance (MCM) protein family signature 384 399 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa6g03014 825 PRINTS Mini-chromosome maintenance (MCM) protein family signature 444 458 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa6g03014 825 PRINTS Mini-chromosome maintenance (MCM) protein family signature 523 531 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa6g03014 825 PRINTS Mini-chromosome maintenance (MCM) protein family signature 472 485 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa6g03014 825 PRINTS Mini-chromosome maintenance (MCM) protein family signature 496 508 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa6g03014 825 Coils Coil 763 783 - -
Vifa6g03014 825 Gene3D - 119 247 IPR012340 -
Vifa6g03014 825 FunFam DNA helicase 328 658 - -
Vifa6g03014 825 Gene3D - 146 197 - -
Vifa6g03014 825 FunFam DNA helicase 701 825 - -
Vifa6g03014 825 MobiDBLite consensus disorder prediction 664 709 - -
Vifa6g03014 825 Pfam MCM OB domain 119 247 IPR033762 -
Vifa6g03014 825 ProSitePatterns MCM family signature. 452 460 IPR018525 GO:0003677|GO:0005524|GO:0006260
Vifa6g03014 825 Gene3D - 8 115 - -
Vifa6g03014 825 MobiDBLite consensus disorder prediction 664 678 - -
Vifa6g03014 825 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 657 IPR027417 -
Vifa6g03014 825 Pfam MCM AAA-lid domain 568 653 IPR041562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03014 Vifa-Chr6 1000958814 1000964044 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03014 1 825 Core DNA Replication Machinery Family AT5G44635 71.494 0.0 1261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03014 K02542 - gmx:100787290 1369.37