Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02998 ATGAAGAGACTTTCCAGCTCTGAATCTCTAGGTGCTCTCATCACAATTTGTCCTACAACAGAGGAACATAGTCCGAGGAGGAACAACAACAGCAACGACAACAACAACAACAACGTGTTTCAGTCGATGTTAGAAGGATTTGATGAAGAAGGGTGTGTTGAGGAAGTGGGGCAGAAGAAACGAAGACTGAGTGTGGATCAAGTGAAGGCTTTGGAGAAGAATTTTGAAGTTGAGAACAAGCTTGAACCAGATAGGAAAGTGAAGCTTGCACAAGAGCTTGGGTTGCAACCAAGACAAGTTGCGGTTTGGTTTCAAAACCGTCGTGCTAGATGGAAAACTAAACAGTTGGAGAGAGATTATGGAGTTCTTAAAGCTAGTTTTGATGCACTTAAGGTTAATTATGAGTCACTTCAACGTGATAATCAAACCTTACTCAAAGAGGTTAAGGAATTGAAATCAAGATTACAATTGGAAGAAGAAAACACAACAACAGAAAGTGATGTTTGTGTAAAACAAGAGTTAATAACATTGCAAGAAACAGAAAACACTACATCCGATGAAACCGCTATTCTTAGATCCGATTCTAAGGACACCGATTACAACTGTTTCAAAAACACCGATGTAGTAGCTTCTCTGTTTCCTGCGGATTTGAAAGACGGTTCTTCGGATAGCGATTCAAGCGCAATCTTGAACGAAGAAAACAACAACAGTCCAAAAGCCGCGATTTCTTCATCTGGGGCTCTTCAAAATCAGAGCTTTTTGAAGTTCGATGGTTCTTCATCTTCTTCGCCGTCCTCAATGAGTAATTGTTTTCACTTTCAGAATGAGTATCAGATTCAGACCCAGTATGTGAAAATGGAAGAGCATAATTTTCTAAGTCCTGATGAGACTTGTAATTTCTTCTCCGATGAACAACCACCGACGCTTCAATGGTATTGTTCGGAAGAGTGGAATTAA 957 0.4002 MKRLSSSESLGALITICPTTEEHSPRRNNNSNDNNNNNVFQSMLEGFDEEGCVEEVGQKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKASFDALKVNYESLQRDNQTLLKEVKELKSRLQLEEENTTTESDVCVKQELITLQETENTTSDETAILRSDSKDTDYNCFKNTDVVASLFPADLKDGSSDSDSSAILNEENNNSPKAAISSSGALQNQSFLKFDGSSSSSPSSMSNCFHFQNEYQIQTQYVKMEEHNFLSPDETCNFFSDEQPPTLQWYCSEEWN 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02998 318 CDD homeodomain 58 115 IPR001356 GO:0003677
Vifa6g02998 318 MobiDBLite consensus disorder prediction 21 37 - -
Vifa6g02998 318 ProSiteProfiles 'Homeobox' domain profile. 54 114 IPR001356 GO:0003677
Vifa6g02998 318 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 43 312 IPR045224 GO:0003700
Vifa6g02998 318 Gene3D - 57 121 - -
Vifa6g02998 318 Pfam Homeobox associated leucine zipper 114 156 IPR003106 GO:0006355|GO:0043565
Vifa6g02998 318 ProSitePatterns 'Homeobox' domain signature. 89 112 IPR017970 GO:0000981|GO:0006355
Vifa6g02998 318 PRINTS Lambda-repressor HTH signature 94 110 IPR000047 GO:0003677
Vifa6g02998 318 PRINTS Lambda-repressor HTH signature 85 94 IPR000047 GO:0003677
Vifa6g02998 318 MobiDBLite consensus disorder prediction 17 37 - -
Vifa6g02998 318 SUPERFAMILY Homeodomain-like 57 116 IPR009057 -
Vifa6g02998 318 FunFam homeobox-leucine zipper protein ATHB-6-like 62 108 - -
Vifa6g02998 318 MobiDBLite consensus disorder prediction 220 244 - -
Vifa6g02998 318 Coils Coil 127 165 - -
Vifa6g02998 318 SMART HOX_1 57 118 IPR001356 GO:0003677
Vifa6g02998 318 Pfam Homeodomain 59 112 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02998 Vifa-Chr6 991568983 991570310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02998 1 318 Homeobox Transcription Factor Family AT2G22430 46.045 3.45e-79 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa6g02998 Homeodomain 6.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02998 K09338 - gmx:100796213 406.757