Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa6g02995 | ATGGTTTTTGATCTCTATCGTTGCAATGATAGCCCAAATTCTTCCCCTCAACAACCACCTTCCTATCAAACGTATCATCATTTTCATACCCTTCATATCGGTTTGATTGCCATGGCGTGCTTTGTTACGACGGTTATGCTCTTTTTAACCTTTGTCATATGGGTAAGGAGATATAACCATGACAATGACCGCGATAGGAGAATCATGCCGATATTGTTTGACGTCCATGGTTATAGAGATTCTAGAACTTCAGATAATGGTCGTGATGATGATGATGCTGTTGAGAGCGTTGTTGATCACCCGATATGGTTCATTCGAACTACAGGCCTTCAAGAATCTGTGATAGATTCTATTGCAGTTTTGAAATATAGAAAAAACGAAGGACTTGTTGATGGGACAGACTGTTCTGTTTGTCTTGGTGAGTTTCAAGAGGATGAGAGTCTGAGGATTTTGCCTAAGTGTAGCCATGCTTTTCATATTCTGTGTATTGATACTTGGCTTCGATCGCATCAGACTTGTCCGTTGTGCCGGGCTCCTGTGATCAATGAGGCTGCTGCAGAGGTGAGTGCTATGGTCACTGGCAGTGAACAGGTTGTTCCAAATGTTTCTGGGGAGAGTCGGAACCAAGAAGGACGAATAGAAAATTTTGATAATGTTGTTGTTGAAGGAATAGGATTAGGAGAATTTCAGGTTGTTAGAATTGATAATGATTATGATAGTGCTTCTGTTGGTGTTTCATCTAGTGAAAGATCATATAAAAATAACACTACGTAG | 774 | 0.4044 | MVFDLYRCNDSPNSSPQQPPSYQTYHHFHTLHIGLIAMACFVTTVMLFLTFVIWVRRYNHDNDRDRRIMPILFDVHGYRDSRTSDNGRDDDDAVESVVDHPIWFIRTTGLQESVIDSIAVLKYRKNEGLVDGTDCSVCLGEFQEDESLRILPKCSHAFHILCIDTWLRSHQTCPLCRAPVINEAAAEVSAMVTGSEQVVPNVSGESRNQEGRIENFDNVVVEGIGLGEFQVVRIDNDYDSASVGVSSSERSYKNNTT | 257 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa6g02995 | 257 | CDD | RING-H2_EL5-like | 134 | 177 | - | - | |
| Vifa6g02995 | 257 | SMART | ring_2 | 135 | 176 | IPR001841 | - | |
| Vifa6g02995 | 257 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Vifa6g02995 | 257 | ProSiteProfiles | Zinc finger RING-type profile. | 135 | 177 | IPR001841 | - | |
| Vifa6g02995 | 257 | Pfam | Ring finger domain | 134 | 177 | IPR001841 | - | |
| Vifa6g02995 | 257 | PANTHER | RING-H2 FINGER PROTEIN ATL51-RELATED | 25 | 183 | IPR044675 | - | |
| Vifa6g02995 | 257 | SUPERFAMILY | RING/U-box | 126 | 182 | - | - | |
| Vifa6g02995 | 257 | FunFam | RING-H2 finger protein ATL54 | 110 | 183 | - | - | |
| Vifa6g02995 | 257 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 186 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa6g02995 | Vifa-Chr6 | 989389104 | 989389877 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa6g02995 | 89 | 192 | C3H Transcription Factor Family | AT4G33565 | 56.637 | 5.32e-41 | 142 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa6g02995 | - | - | psat:127106001 | 351.288 |