Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02994 ATGGGAAAAACCAAACTTTCCACCCTTTTCTCTTCCAATAACAATCACCCTCTTCCTCTTTCCAATACCATTAACCAAACTCTTGTAAACAAACCCAATTCACACAAAGATACTTTTCCCTTTTCACTCTTCAAATTTTTTCTATGCTTTATCTGTACAAAGAAAGTTGATGGAGGATCAAGAACAGAGGAAGAAGAGAAAGTGTACTCTTGGTTATACACCTTGGCTCATGCTGAGAAAAACATGGTCTTTGAGTATGTTAGGTCAACTGAAAGAGGCTTAAGTTTTACTGAAGCTGAGAGGAGGCTGCAGGAAAACGGACCAAATGCTCCCCTTGAGTATTCTTTTCCAAGCTCGTGGCATCTTCTATGGAACGCTCTTTTCCATCCTTTCAATATGATTCTGATTGTTTTATCTTCAATGTCATTCATTGCCCGTGACTATCCAAACGGATTCATCATGTTCATATTACTTTTTATCAGTGTCATCCTTCGCTTCTGTCTGGAACACAAAAGCTCAAAAGCAGCGAAGAAGCTTTCAGAATTTTTAAGCTGTCCTATAAGAGTTCAAAGATGTGCTGGTAGAATTGAGCAGAAAGAATTGACAGTTCAAGTTGATCACAAGGATGTAGTTCCAGGTGACATTGTTATTTTTGAACCTGGAGACCTCTTTCCTGGAGATGTCAGACTGTTATCTTCAAAACACCTTGTTGTAAGTCAGGCCTCACTAACTGGGGAATCTATAACAACTGATAAAACTGCTGATGTTCGAGAAGATCACATCACTCCTTTACTAGATTTAAAGAACATTTGTTTTATGGGAACAAATGTGGTATCAGGTACTGGAACGGGTTTAGTTATTTCAACTGGATCCAATACTTACATGAGCACGATGTTTTCAAAAATTGGGAAGAAGAAGCCACCAGATGACTTTGAAAAGGGACTCAGATGGATATTTTACACGCTTATTTCCGTTATGGTAGTAGTTGTTACAATTATGTTTGTGACAGACTACACAGCATCTAAGAATTTGAGCCAGAGTATTCTCTTTGCCATCTCAGTTGCATCTGCCCTCAATCCTCAGATGCTTCCCCTCATCATTAACACATGCCTTGCGAAAGGAGCACTTGCTATGGCTAAAGACAGATGTATTGTAAAAAGTCTAACAACCATGCGCGAGATGGGATCAATGGATATCCTTTGTATTGACAAGACAGGCACCCTTACCATGAATTATGCAATCTTGGTTAACCATCTCGATTGTAGGGGCTTACCCCGAGAAAAAGTTCTACACTATGCCTTCCTCAGTTCTTACTTCAAGACTGAGCAAAAGTATCCTCTAGATGATGCAATTCTAGCACATGTATATTCAGATGGATTCAAGTTTCGGCCATCTAAATGGAAGAAGATCAATGAGATTCCTTTTGACTTCATAAGAAGAAGAGTATCTGTCATGTTAGAAACAGACGATAGACACTCGCAGTTCTTTGGCAGGTTCATGGTAACAAAAGGAGCACTGTTGGAAGTTATAAATGTTTGTTCATTTATTGAGAATTTTGATACAGATGAAATCTCTACATTCTCCTCAGATGACTATCACAGGATTTTAAATCTATCAGAAGAATTGAGCAATGAAGGGTTAAGGGTTATAGCAGTAGCTATAAAGAAGCTGGAAATGCAGCAAACTTGCGAAACAAGTAAAGGAAGCAAGAGAGGCAACCATGATTTCGAAAGAGACATGATATTCCTTGGAGTTATAACATTTTTTGACCCGCCTAAGGACTCGGCAAAGCAAGCACTTTGGTGTTTAGCGGAGAAGGGAGTGAAAGCAAAGGTTTTAACAGGTGACTCACTTTCATTAACCACAAGAATATGCAGAGAAGTTGGCATAAGTACCACTCATGTTATAACAGGACCTGAGCTAGAAGAACTTGATCAAGACACTTTCCACGAGACCGTTAAAAGAGCAACGGTACTAGCTCGTCTCACGCCAATGCAGAAACTCCGAGTCGTTCAATCCTTGCAGACAGTAGGAAACCATGTCGTTGGATTCTTGGGAGACGGTGTGAATGATTCACTAGCATTGGACGCTGCCCATGTAAGCATTTCTGTGGACTCAGGTGTACCCATTGCCAAAGACATGGCAGATATAATCTTACTAGAGAAAGATCTCAACGTGCTCGTCGCGGGCGTTGAGCACGGCCGTCTCACCTTCGGCAACACAATGAAATATGTAAAAATGTCAGTTATTGCTAACTTAGGAAGTATCATTTCACTTCTAATAGCAACATTGTTCCTTAAATACGAACCCTTAACTTCTAGACAGCTTCTTACACAGAATTTCATCTACAGTCTTGGACAAATCGTTATCCCTTGGGACAAAATGGACGAAGAATATTTAAAAACTCCTCATAAATGGTCGGAACGGGGCTTACCAATGTTCATATTATGGAACGGACCCGTCTGCACTTTCTGCGATGTTGCAACAATTTTGTTTCTTTTGTTCTATTACAAAGCTAATGAAGATGAGAAATTTTTCCATACAGCTTGGTTCATTGAGGGTCTTCTCATGCAGACTCTCATTGTTCATTTGATAAGAACTGAGAAAATCCCTTTTGTACAAGATATTGCATCTTGGCCTGTGATTTTCTCTACTCTTGTTATATCTGCAATTGGAATTGCAATTCCATTTACTCCTATTGGAAAGGTTATGGAATTCACAGTTTTACCTCTCTCCTATTTTGGATTCTTGTTTGCTATTTTTCTGGGATATTTTACACTTGGTCAGATTGTAAAGAGACTTTATATATTTGTTTATAAGAGATGGCTTTGA 2832 0.3919 MGKTKLSTLFSSNNNHPLPLSNTINQTLVNKPNSHKDTFPFSLFKFFLCFICTKKVDGGSRTEEEEKVYSWLYTLAHAEKNMVFEYVRSTERGLSFTEAERRLQENGPNAPLEYSFPSSWHLLWNALFHPFNMILIVLSSMSFIARDYPNGFIMFILLFISVILRFCLEHKSSKAAKKLSEFLSCPIRVQRCAGRIEQKELTVQVDHKDVVPGDIVIFEPGDLFPGDVRLLSSKHLVVSQASLTGESITTDKTADVREDHITPLLDLKNICFMGTNVVSGTGTGLVISTGSNTYMSTMFSKIGKKKPPDDFEKGLRWIFYTLISVMVVVVTIMFVTDYTASKNLSQSILFAISVASALNPQMLPLIINTCLAKGALAMAKDRCIVKSLTTMREMGSMDILCIDKTGTLTMNYAILVNHLDCRGLPREKVLHYAFLSSYFKTEQKYPLDDAILAHVYSDGFKFRPSKWKKINEIPFDFIRRRVSVMLETDDRHSQFFGRFMVTKGALLEVINVCSFIENFDTDEISTFSSDDYHRILNLSEELSNEGLRVIAVAIKKLEMQQTCETSKGSKRGNHDFERDMIFLGVITFFDPPKDSAKQALWCLAEKGVKAKVLTGDSLSLTTRICREVGISTTHVITGPELEELDQDTFHETVKRATVLARLTPMQKLRVVQSLQTVGNHVVGFLGDGVNDSLALDAAHVSISVDSGVPIAKDMADIILLEKDLNVLVAGVEHGRLTFGNTMKYVKMSVIANLGSIISLLIATLFLKYEPLTSRQLLTQNFIYSLGQIVIPWDKMDEEYLKTPHKWSERGLPMFILWNGPVCTFCDVATILFLLFYYKANEDEKFFHTAWFIEGLLMQTLIVHLIRTEKIPFVQDIASWPVIFSTLVISAIGIAIPFTPIGKVMEFTVLPLSYFGFLFAIFLGYFTLGQIVKRLYIFVYKRWL 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02994 943 SUPERFAMILY Calcium ATPase, transmembrane domain M 89 940 IPR023298 -
Vifa6g02994 943 Pfam haloacid dehalogenase-like hydrolase 397 698 - -
Vifa6g02994 943 Gene3D - 185 289 - -
Vifa6g02994 943 PRINTS Magnesium-transporting ATPase signature 743 758 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vifa6g02994 943 PRINTS Magnesium-transporting ATPase signature 435 448 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vifa6g02994 943 PRINTS Magnesium-transporting ATPase signature 846 867 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vifa6g02994 943 PRINTS Magnesium-transporting ATPase signature 896 917 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vifa6g02994 943 PRINTS Magnesium-transporting ATPase signature 813 829 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vifa6g02994 943 PRINTS Magnesium-transporting ATPase signature 314 330 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vifa6g02994 943 PRINTS Magnesium-transporting ATPase signature 761 772 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vifa6g02994 943 PRINTS Magnesium-transporting ATPase signature 793 806 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vifa6g02994 943 SUPERFAMILY Calcium ATPase, transduction domain A 200 300 IPR008250 -
Vifa6g02994 943 NCBIfam magnesium-translocating P-type ATPase 66 942 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vifa6g02994 943 Gene3D - 398 722 IPR023214 -
Vifa6g02994 943 SUPERFAMILY HAD-like 576 733 IPR036412 -
Vifa6g02994 943 PANTHER CATION TRANSPORTING ATPASE 85 933 - -
Vifa6g02994 943 SFLD C1.7: P-type atpase like 383 735 - -
Vifa6g02994 943 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 394 592 IPR023299 GO:0000166
Vifa6g02994 943 Pfam E1-E2 ATPase 202 380 - -
Vifa6g02994 943 NCBIfam HAD-IC family P-type ATPase 155 446 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa6g02994 943 NCBIfam HAD-IC family P-type ATPase 651 765 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa6g02994 943 Gene3D - 413 589 IPR023299 GO:0000166
Vifa6g02994 943 SMART Cation_ATPase_N_a_2 74 147 IPR004014 -
Vifa6g02994 943 ProSitePatterns E1-E2 ATPases phosphorylation site. 403 409 IPR018303 -
Vifa6g02994 943 Gene3D - 148 895 - -
Vifa6g02994 943 Pfam Cation transporter/ATPase, N-terminus 83 140 IPR004014 -
Vifa6g02994 943 SFLD p-type atpase 383 735 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02994 Vifa-Chr6 989384344 989388515 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02994 92 808 Primary Pumps ATPases(2) AT1G10130 26.707 3.45e-61 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02994 K01531 - gmx:100795153 1540.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g02994 6 989384344 989388515 Vifa6g02994 6 989384344 989388515 ECH