Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02971 ATGTCAGAGAGTAACGACATCGCCGCCGCAACTGCCGGAGGAAGTGGTTTCCGGAGTCCAACATTCTCACGGCCGGTTTCATGGAGTGACCGCTCACCGACAACCAGAAAACCGCTTCCGGCGGCGAATAACAGACCTCGGTCGTTGCTTCCGCCGCTTCGTCCTCTTTCAATCAGCAAACGCAGCATTGAGGAATGGCCGAGTGCTGGATCTGACGATCTCGGAGTTTGGCCACAAGCTGAGACTCCGAGAGGGAGAGGTTCCGTCACCGGTTCAGTCACTGGTTCGGAGTTTCAGTTCAAGAGAGACAAGTTAGCTTTCTATGATAAAGAATGTTCTAGAATCGCTGAACATGTTTATCTTGGAAGCGACACTGTTGCGAAGAATCATGAGCTTTTAAGAAAGAATGGGATTACGCACGTGCTGAATTGTGTTGGGTTTATTTGTCCTGAGTATTTCAGAAGTGATTTTGTTTACAAAACTCTTTGGTTGCAGGATAGTCCAACGGAAGACATCATGAGTATTCTGTACGATGTTTTTGATTATTTTGAGGATGTTAGAGTACAAGGTGGTCGTGTTCTTGTTCATTGTTGTCAAGGTGTTTCTAGATCAACTTCTTTGGTCATTGCTTATCTTATGTGGAGAGAAGGACAAAGCTTTGAGGATGCTTTTCATTATGTTAAGAATGCTCGTAGTGTTACGAATCCTAACATGGGTTTTGCTTCTCAACTTCTGCAGTGTCAGAAAAGAGTGGTGAATGTGAATGTGAATGCTAATGCTAATGCAAATGCTATGCCTTCTAGTCCTAATTTTGTTCTTAGGATGTATAGAATGGCGCCTCATTCTCCTTATGATCCTCTTCATTTGGTACCTAAAATGGTTAACAAGCCTTGTGCGAAAGCACTTGATTCTCGCGGTGCTTTTATTGTTCAAATTCCCTCTGTGATATATATTTGGATTGGTAAAAATTGTAGTTCTGTTATGTCTTGTAATGCAAGAATGGCAGCTTTGCAGGTTGTTCGTTATGAGAAAGCAAATGCTCCGATTCGTGGTATTTGTGAAGATGAAGAGCCGATGGAATTCTGGGCTGCTTTTTCTAACTACAAACTATTGTTGGGGAGTTCTGGTAATAAGGGAGAGATGGTGATGAAGGATTCTGATGAAAGAATGGAGATCGATGATGATGTTGATATGGGGATCTATCCTAGAAAAGTTCATGAGTATGATTTGGACTTTGGGATTTTTACCGAAGCACTTGCTGGTGGAGTTGTTCCACCTTTTTCTGTGTCCAATACCGGAACAGAAACTTTGCTTCCTGCTAGAGAAAATAGCTGGGGAAGACTAAGGAGGAAGCTTGCTAATAGTATCATGAAAGGGTTGTTTACATCCTCTAAATGCTGTGATATAGCCTCGCCAAAAGACGAAGTTAAGGTGAACAGTGGTTCATTGTTGCCACCAACTCCTAGTCGAAAACCAGATTCTTTTCCTTGTTCTTTAAGTAACAGCCCGAAGTTCAGTTCCAAGTCGCCCACACTTTCACCTTCCAATTCTGATTACGCCAGTTCCTTCACACTTTCGCCAGCATCTACACATTGGTCTGATTTGTCATTCATGTCCTCTCGGCAGCCATCGCCTTCTTCTGGACTTGAATCAACCCAACAACACTTTTATGTCAACAAAGACGCACCTTTATTAGAAAGATCCTCTTCGCTTTGCAAAGGCACCACTGTCTCTTCATCTTCAGAGACACTTTTGGCCAACCATACCATGGCAAGGACAAAGTCCTACAATGGGTCTAACTCTAACCGTTCCATTGCAGAGCGCAGAGGGAGTAAACCGCCACCTCAAATGTTGGTACCTTCTTTCAGGGAATCACTGACATTCACTATGCCGGATCGAGAGGGTAATTTGATAAAGTAA 1920 0.4333 MSESNDIAAATAGGSGFRSPTFSRPVSWSDRSPTTRKPLPAANNRPRSLLPPLRPLSISKRSIEEWPSAGSDDLGVWPQAETPRGRGSVTGSVTGSEFQFKRDKLAFYDKECSRIAEHVYLGSDTVAKNHELLRKNGITHVLNCVGFICPEYFRSDFVYKTLWLQDSPTEDIMSILYDVFDYFEDVRVQGGRVLVHCCQGVSRSTSLVIAYLMWREGQSFEDAFHYVKNARSVTNPNMGFASQLLQCQKRVVNVNVNANANANAMPSSPNFVLRMYRMAPHSPYDPLHLVPKMVNKPCAKALDSRGAFIVQIPSVIYIWIGKNCSSVMSCNARMAALQVVRYEKANAPIRGICEDEEPMEFWAAFSNYKLLLGSSGNKGEMVMKDSDERMEIDDDVDMGIYPRKVHEYDLDFGIFTEALAGGVVPPFSVSNTGTETLLPARENSWGRLRRKLANSIMKGLFTSSKCCDIASPKDEVKVNSGSLLPPTPSRKPDSFPCSLSNSPKFSSKSPTLSPSNSDYASSFTLSPASTHWSDLSFMSSRQPSPSSGLESTQQHFYVNKDAPLLERSSSLCKGTTVSSSSETLLANHTMARTKSYNGSNSNRSIAERRGSKPPPQMLVPSFRESLTFTMPDREGNLIK 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02971 639 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 170 231 IPR000387 GO:0016311|GO:0016791
Vifa6g02971 639 PANTHER MKPA PROTEIN 24 623 - -
Vifa6g02971 639 ProSiteProfiles Dual specificity protein phosphatase domain profile. 111 253 IPR020422 GO:0006470|GO:0008138
Vifa6g02971 639 MobiDBLite consensus disorder prediction 66 93 - -
Vifa6g02971 639 SMART dsp_5 111 250 IPR020422 GO:0006470|GO:0008138
Vifa6g02971 639 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 103 253 IPR029021 -
Vifa6g02971 639 MobiDBLite consensus disorder prediction 482 520 - -
Vifa6g02971 639 MobiDBLite consensus disorder prediction 16 41 - -
Vifa6g02971 639 SUPERFAMILY Actin depolymerizing proteins 267 373 - -
Vifa6g02971 639 CDD DSP 112 246 - -
Vifa6g02971 639 MobiDBLite consensus disorder prediction 592 639 - -
Vifa6g02971 639 MobiDBLite consensus disorder prediction 592 607 - -
Vifa6g02971 639 MobiDBLite consensus disorder prediction 1 53 - -
Vifa6g02971 639 Gene3D Severin 274 370 IPR029006 -
Vifa6g02971 639 ProSitePatterns Tyrosine specific protein phosphatases active site. 195 205 IPR016130 GO:0016311|GO:0016791
Vifa6g02971 639 Pfam Dual specificity phosphatase, catalytic domain 119 249 IPR000340 GO:0008138|GO:0016311
Vifa6g02971 639 Gene3D Protein tyrosine phosphatase superfamily 91 252 IPR029021 -
Vifa6g02971 639 SMART VILL_6 277 368 IPR007122 GO:0051015
Vifa6g02971 639 MobiDBLite consensus disorder prediction 477 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02971 Vifa-Chr6 983078470 983080389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02971 3 147 Protein tyrosine phosphatase (PTP) family AT3G55270 42.138 7.30e-31 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02971 - - tpra:123917031 889.026