Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02949 ATGTTAGAAGCTCCTGCACGTGATTCTGAGTTGAGTTTAGAGACTGTGAATTCCACACAGAGAAGTTCAATGAGCAGTGAAAGCATTTGCAGCACAAGTTTCAGTCGTCTTTCATTCGACCTTATCCCCGCCTCGCCTGAGAGTCTCTCCATCAAGCCTCACCGCTCCTCTGATTTCGCTTACTCCGCTATCCGTTCCGCTACATTCCGTCGCAAATCCGCACTCACCTTCCGTGACTTCCACCTCCTCCGTCGTATCGGTGCCGGTGATATCTGCACTGTATACCTCTGCCGCCTCCGAAACGGAAATAACAAATTCGAAAACGAAGAAGCGTCTTGCTTGTACGCGATGAAGGTAGTGGATAAAGAGGTTGTAGCATTGAAGAAGAAAGTACAGAGAGCTGAAATGGAGAGAAAGATTCTCAAGATGCTTGATCATCCTTTTCTACCTACACTCTACGCTGAGTTTGAAGCTTCTCATTTCTCTTGCATTGTTATGGAGTTTTGTTCCGGTGGAGACTTGCATTCTCTACGCCATAAATATCCTAATAACCGTCTTCCTCTTTCTTCCGCAAGATTTTATGTAGCTGAGGTGTTGGTGGCTTTGGAGTACCTTCACATGCTTGGAATCATTTACAGAGATCTAAAGCCTGAGAATGTGCTAGTCAGATCCGACGGTCACATTATGCTTTCAGATTTTGATCTTTCACTCTGTTCTGATGCGATCCCTGCCGTTGAATCATCAGATTCCTTAGGAGACTCTGCGTTTCCACAAACATTATCCTGCACCCGCACGCGTTCTTTTTCCACTCCATTCACTTGCTTTTCGAACCGGTTGTTCCGTTCGCGTAAGGTTCAAACCATTCAACCGAACCGGCTTTTTGTGGCTGAACCAGTTTCAGCCCGGTCCTGTTCATTTGTTGGAACGCACGAGTATGTCTCACCGGAGGTAGCTTCCGGAAACTCCCACGGAAACGCCGTGGACTGGTGGTCGTTTGGAATATTCATCTACGAGCTCATCTATGGACGAACTCCGTTTGCGGCTCCATCGAACAAGGCTACGCTGCGTAGCATCTTAAAAAAGCCCTTAACCTTTCCCACCGCCACGCCTTCAACCACGCTTGAACGCCACGCGCGAGACTTGATTTCTAGCTTGCTTAACAAGGACCCGGCTCAACGGCTCGGGTCAAGACGCGGCGCAGCTGACGTCAAGAAGCATCCGTTTTTCAAAGGGATTAACTTGGCGCTGATTCGCATGCTGACGCCGCCTGAGGTTCCGGGCTCAAGAAGGCCAAAAACGACGTCGTTGTACCGCGGGAAGGATAGACATAACAGCAACGTTAGTAGTAGTATACAGGAACCAACGGCGTCGTTTGATGTTTTCTTTTGA 1389 0.4845 MLEAPARDSELSLETVNSTQRSSMSSESICSTSFSRLSFDLIPASPESLSIKPHRSSDFAYSAIRSATFRRKSALTFRDFHLLRRIGAGDICTVYLCRLRNGNNKFENEEASCLYAMKVVDKEVVALKKKVQRAEMERKILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRHKYPNNRLPLSSARFYVAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDAIPAVESSDSLGDSAFPQTLSCTRTRSFSTPFTCFSNRLFRSRKVQTIQPNRLFVAEPVSARSCSFVGTHEYVSPEVASGNSHGNAVDWWSFGIFIYELIYGRTPFAAPSNKATLRSILKKPLTFPTATPSTTLERHARDLISSLLNKDPAQRLGSRRGAADVKKHPFFKGINLALIRMLTPPEVPGSRRPKTTSLYRGKDRHNSNVSSSIQEPTASFDVFF 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02949 462 Gene3D Transferase(Phosphotransferase) domain 1 302 427 - -
Vifa6g02949 462 ProSiteProfiles Protein kinase domain profile. 80 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02949 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Vifa6g02949 462 MobiDBLite consensus disorder prediction 423 450 - -
Vifa6g02949 462 FunFam serine/threonine-protein kinase D6PK-like 301 427 - -
Vifa6g02949 462 FunFam protein kinase PINOID 169 237 - -
Vifa6g02949 462 SUPERFAMILY Protein kinase-like (PK-like) 60 433 IPR011009 -
Vifa6g02949 462 SMART serkin_6 80 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02949 462 Pfam Protein kinase domain 303 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02949 462 Pfam Protein kinase domain 80 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02949 462 PANTHER FLIPPASE KINASE 1-RELATED 19 429 - -
Vifa6g02949 462 Gene3D Phosphorylase Kinase; domain 1 78 168 - -
Vifa6g02949 462 Gene3D Transferase(Phosphotransferase) domain 1 169 236 - -
Vifa6g02949 462 FunFam protein kinase PINOID 2 78 168 - -
Vifa6g02949 462 Coils Coil 117 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02949 Vifa-Chr6 976750398 976751893 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02949 8 440 AGC Kinase Gene Family AT2G34650 67.198 0.0 579
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vifa6g02949 Pkinase 2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02949 - - vun:114177159 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g02949 6 976750398 976751893 Vifa6g02949 6 976750398 976751893 ECH